Variant report

Variant	rs73981903
Chromosome Location	chr17:17104831-17104832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:17103497..17105821-chr17:17140669..17142216,2	K562	blood:
2	chr17:17099063..17102775-chr17:17103264..17109484,6	K562	blood:
3	chr17:16943176..16945630-chr17:17102978..17105800,2	K562	blood:
4	chr17:17103562..17107466-chr17:17107503..17109938,5	MCF-7	breast:
5	chr17:17104294..17107636-chr17:17108280..17111234,4	MCF-7	breast:
6	chr16:31722921..31725637-chr17:17104707..17107535,2	MCF-7	breast:
7	chr17:17104671..17106490-chr17:17138945..17141485,2	MCF-7	breast:
8	chr17:17091439..17092954-chr17:17102481..17104887,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000264187	Chromatin interaction
ENSG00000179598	Chromatin interaction
ENSG00000261731	Chromatin interaction
ENSG00000197302	Chromatin interaction
ENSG00000154803	Chromatin interaction
ENSG00000266498	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10048152	1.00[EUR][1000 genomes]
rs1131632	1.00[EUR][1000 genomes]
rs16961406	1.00[EUR][1000 genomes]
rs28533026	1.00[EUR][1000 genomes]
rs28829096	1.00[EUR][1000 genomes]
rs4485421	1.00[EUR][1000 genomes]
rs55792503	1.00[EUR][1000 genomes]
rs56247606	1.00[EUR][1000 genomes]
rs56343767	1.00[EUR][1000 genomes]
rs56912118	1.00[EUR][1000 genomes]
rs58169814	1.00[EUR][1000 genomes]
rs58442149	1.00[EUR][1000 genomes]
rs58690840	1.00[EUR][1000 genomes]
rs58702370	1.00[EUR][1000 genomes]
rs59327849	1.00[EUR][1000 genomes]
rs60029796	1.00[EUR][1000 genomes]
rs60192272	1.00[EUR][1000 genomes]
rs60332371	1.00[EUR][1000 genomes]
rs60364428	1.00[EUR][1000 genomes]
rs60545734	1.00[EUR][1000 genomes]
rs60697210	1.00[EUR][1000 genomes]
rs60890438	1.00[EUR][1000 genomes]
rs61024568	1.00[EUR][1000 genomes]
rs61218165	1.00[EUR][1000 genomes]
rs61608940	1.00[EUR][1000 genomes]
rs7219836	1.00[EUR][1000 genomes]
rs7223145	1.00[EUR][1000 genomes]
rs7223758	1.00[EUR][1000 genomes]
rs7225496	1.00[EUR][1000 genomes]
rs73979025	1.00[EUR][1000 genomes]
rs73979028	1.00[EUR][1000 genomes]
rs73979045	1.00[EUR][1000 genomes]
rs73979046	1.00[EUR][1000 genomes]
rs73979048	1.00[EUR][1000 genomes]
rs73979049	1.00[EUR][1000 genomes]
rs73979056	1.00[EUR][1000 genomes]
rs73979057	1.00[EUR][1000 genomes]
rs73979063	1.00[EUR][1000 genomes]
rs73979079	1.00[EUR][1000 genomes]
rs73979080	1.00[EUR][1000 genomes]
rs73979088	1.00[EUR][1000 genomes]
rs73979096	1.00[EUR][1000 genomes]
rs73979097	1.00[EUR][1000 genomes]
rs73981904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73981918	1.00[EUR][1000 genomes]
rs73981919	1.00[EUR][1000 genomes]
rs73981940	1.00[EUR][1000 genomes]
rs8079021	1.00[EUR][1000 genomes]
rs9897035	1.00[EUR][1000 genomes]
rs9905658	1.00[EUR][1000 genomes]
rs9913824	1.00[EUR][1000 genomes]
rs9914436	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833380	chr17:17088416-17241206	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1065811	chr17:17104760-17225204	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17086400-17106600	Weak transcription	Colonic Mucosa	Colon
2	chr17:17090200-17107000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr17:17090200-17107400	Weak transcription	Small Intestine	intestine
4	chr17:17090800-17106600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr17:17090800-17106600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr17:17090800-17107200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr17:17091800-17107600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr17:17092200-17105400	Weak transcription	Gastric	stomach
9	chr17:17092400-17105600	Weak transcription	Brain Germinal Matrix	brain
10	chr17:17093600-17107400	Weak transcription	Dnd41	blood
11	chr17:17093600-17108400	Weak transcription	Thymus	Thymus
12	chr17:17093800-17105400	Weak transcription	Pancreas	Pancrea
13	chr17:17093800-17105600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr17:17093800-17105600	Weak transcription	Esophagus	oesophagus
15	chr17:17093800-17107400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr17:17093800-17107600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr17:17094000-17107200	Weak transcription	Aorta	Aorta
18	chr17:17095000-17105600	Weak transcription	Right Atrium	heart
19	chr17:17095200-17105800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr17:17095200-17108400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr17:17095400-17108200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr17:17095600-17106600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr17:17095600-17107200	Weak transcription	Brain Angular Gyrus	brain
24	chr17:17095600-17107400	Weak transcription	HMEC	breast
25	chr17:17095600-17107600	Weak transcription	Osteobl	bone
26	chr17:17096000-17107400	Weak transcription	Fetal Heart	heart
27	chr17:17096200-17107200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr17:17096800-17106000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr17:17096800-17107400	Weak transcription	Primary B cells from cord blood	blood
30	chr17:17098600-17105400	Weak transcription	GM12878-XiMat	blood
31	chr17:17100800-17107600	Weak transcription	NHDF-Ad	bronchial
32	chr17:17101200-17105400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr17:17101200-17106400	Weak transcription	Fetal Brain Male	brain
34	chr17:17101200-17107800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr17:17102400-17107400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr17:17102800-17105400	Enhancers	Adipose Nuclei	Adipose
37	chr17:17103200-17105000	Enhancers	Placenta	Placenta
38	chr17:17103200-17105600	Enhancers	Fetal Lung	lung
39	chr17:17103200-17106400	Strong transcription	Primary T cells from cord blood	blood
40	chr17:17103400-17105000	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr17:17103400-17105200	Enhancers	Fetal Muscle Trunk	muscle
42	chr17:17103400-17105200	Enhancers	NHLF	lung
43	chr17:17103400-17105400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr17:17103400-17105400	Enhancers	Ovary	ovary
45	chr17:17103400-17106600	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr17:17103400-17106800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr17:17103600-17105000	Flanking Active TSS	Colon Smooth Muscle	Colon
48	chr17:17103600-17105600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr17:17103600-17108200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr17:17103800-17106000	Enhancers	HSMMtube	muscle

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