Variant report

Variant	rs60697210
Chromosome Location	chr17:16962543-16962544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:16961533..16963190-chr17:16969814..16972277,2	MCF-7	breast:
2	chr17:16958422..16961495-chr17:16962516..16966035,3	MCF-7	breast:
3	chr17:16960541..16963488-chr17:16973669..16975731,3	MCF-7	breast:
4	chr17:16953457..16957915-chr17:16961428..16964742,4	K562	blood:
5	chr17:16961416..16963930-chr17:16973048..16975828,2	MCF-7	breast:
6	chr17:16962310..16965177-chr17:16967176..16969489,2	MCF-7	breast:
7	chr17:16955891..16957915-chr17:16961428..16963448,2	K562	blood:
8	chr17:16958465..16960222-chr17:16960878..16963338,2	K562	blood:

No data

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10048152	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1131632	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16961406	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28829096	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4485421	1.00[EUR][1000 genomes]
rs55792503	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56247606	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56343767	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56912118	1.00[EUR][1000 genomes]
rs58169814	1.00[EUR][1000 genomes]
rs58377774	1.00[AFR][1000 genomes]
rs58442149	1.00[EUR][1000 genomes]
rs58690840	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58702370	1.00[EUR][1000 genomes]
rs60029796	1.00[EUR][1000 genomes]
rs60192272	1.00[EUR][1000 genomes]
rs60332371	1.00[EUR][1000 genomes]
rs60364428	1.00[EUR][1000 genomes]
rs60545734	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60890438	1.00[EUR][1000 genomes]
rs61024568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61218165	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61608940	1.00[EUR][1000 genomes]
rs7219836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7223145	1.00[EUR][1000 genomes]
rs7223758	1.00[EUR][1000 genomes]
rs7225496	1.00[EUR][1000 genomes]
rs73979025	1.00[EUR][1000 genomes]
rs73979028	1.00[EUR][1000 genomes]
rs73979045	1.00[EUR][1000 genomes]
rs73979046	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979047	0.89[AFR][1000 genomes]
rs73979048	1.00[EUR][1000 genomes]
rs73979049	1.00[EUR][1000 genomes]
rs73979056	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979057	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979079	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979085	0.84[AMR][1000 genomes]
rs73979088	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979092	0.83[AFR][1000 genomes]
rs73979096	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979097	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73981903	1.00[EUR][1000 genomes]
rs73981904	1.00[EUR][1000 genomes]
rs8079021	1.00[EUR][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16949000-16966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr17:16949000-16975200	Weak transcription	K562	blood
3	chr17:16950200-16962600	Weak transcription	Dnd41	blood
4	chr17:16950200-16968200	Enhancers	Psoas Muscle	Psoas
5	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
6	chr17:16953600-16967600	Genic enhancers	Fetal Muscle Trunk	muscle
7	chr17:16954800-16981200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr17:16955400-16970200	Weak transcription	NH-A	brain
9	chr17:16955400-16981200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr17:16956400-16972600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr17:16956600-16965600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr17:16956600-16966200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:16956800-16966000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr17:16957200-16962800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:16957200-16964800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr17:16957200-16965800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr17:16957400-16963200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr17:16957400-16965000	Weak transcription	Primary B cells from cord blood	blood
19	chr17:16957600-16964000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr17:16957800-16963800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr17:16958800-16965200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr17:16959200-16964600	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr17:16959200-16965400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr17:16959200-16966800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr17:16959200-16982200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr17:16959400-16972800	Weak transcription	HUVEC	blood vessel
27	chr17:16959600-16963800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr17:16959600-16966800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr17:16959600-16966800	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr17:16959600-16979800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr17:16959600-16992000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr17:16959800-16963200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr17:16959800-16964400	Strong transcription	Fetal Intestine Small	intestine
34	chr17:16959800-16966400	Weak transcription	Small Intestine	intestine
35	chr17:16960000-16962800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr17:16960000-16963000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr17:16960000-16963000	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr17:16960200-16962600	Strong transcription	Brain Germinal Matrix	brain
39	chr17:16960200-16963200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr17:16960200-16963800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr17:16960200-16964400	Strong transcription	Fetal Intestine Large	intestine
42	chr17:16960200-16965000	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr17:16960200-16966000	Strong transcription	Thymus	Thymus
44	chr17:16960200-16967600	Genic enhancers	Fetal Muscle Leg	muscle
45	chr17:16960400-16962600	Weak transcription	Brain Hippocampus Middle	brain
46	chr17:16960400-16962600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr17:16960400-16963400	Weak transcription	Liver	Liver
48	chr17:16960400-16963400	Strong transcription	Osteobl	bone
49	chr17:16960400-16963600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr17:16960400-16963600	Weak transcription	Brain Angular Gyrus	brain

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