Variant report

Variant	rs58377774
Chromosome Location	chr17:17012458-17012459
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16904847..16905768-chr17:17011815..17012591,3	MCF-7	breast:
2	chr17:17011246..17012755-chr17:17014614..17017121,2	K562	blood:
3	chr17:16283299..16285911-chr17:17011772..17013387,2	MCF-7	breast:
4	chr17:17011485..17013573-chr17:17019778..17021863,2	MCF-7	breast:
5	chr17:16944526..16947227-chr17:17010435..17013618,3	MCF-7	breast:
6	chr17:17011246..17012827-chr17:17014614..17017458,3	K562	blood:

Variant related genes	Relation type
ENSG00000170315	Chromatin interaction
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1131632	0.93[AFR][1000 genomes]
rs16961406	0.89[AFR][1000 genomes]
rs55792503	0.96[AFR][1000 genomes]
rs56247606	0.96[AFR][1000 genomes]
rs58690840	0.82[AFR][1000 genomes]
rs60545734	1.00[AFR][1000 genomes]
rs60697210	1.00[AFR][1000 genomes]
rs61024568	1.00[AFR][1000 genomes]
rs7219836	1.00[AFR][1000 genomes]
rs73979046	0.84[AFR][1000 genomes]
rs73979047	0.89[AFR][1000 genomes]
rs73979056	0.94[AFR][1000 genomes]
rs73979063	1.00[AFR][1000 genomes]
rs73979080	1.00[AFR][1000 genomes]
rs73979088	0.99[AFR][1000 genomes]
rs73979092	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979096	0.96[AFR][1000 genomes]
rs73979097	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059280	chr17:16975059-17017957	Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16986800-17013600	Weak transcription	HUVEC	blood vessel
2	chr17:16997000-17016600	Enhancers	Left Ventricle	heart
3	chr17:16998200-17016200	Enhancers	Fetal Heart	heart
4	chr17:16998600-17015400	Genic enhancers	Fetal Muscle Leg	muscle
5	chr17:16998600-17016600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr17:16999000-17012800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr17:17000200-17012600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr17:17000200-17018200	Weak transcription	NH-A	brain
9	chr17:17001800-17012800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr17:17002600-17023200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr17:17003400-17012600	Weak transcription	Fetal Brain Male	brain
12	chr17:17004000-17014000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr17:17006200-17033000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr17:17006800-17016600	Enhancers	Right Ventricle	heart
15	chr17:17007400-17014200	Enhancers	Colon Smooth Muscle	Colon
16	chr17:17007400-17016600	Enhancers	Pancreas	Pancrea
17	chr17:17007600-17016600	Enhancers	Right Atrium	heart
18	chr17:17007800-17014000	Enhancers	Fetal Thymus	thymus
19	chr17:17007800-17015400	Enhancers	Psoas Muscle	Psoas
20	chr17:17007800-17021000	Weak transcription	HepG2	liver
21	chr17:17008000-17017200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr17:17008400-17014800	Enhancers	NHDF-Ad	bronchial
23	chr17:17008400-17015000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr17:17008400-17016600	Enhancers	Placenta	Placenta
25	chr17:17009200-17013000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr17:17009200-17015400	Enhancers	Ovary	ovary
27	chr17:17009200-17025200	Enhancers	Brain Anterior Caudate	brain
28	chr17:17009400-17013600	Enhancers	Brain Substantia Nigra	brain
29	chr17:17009400-17013800	Enhancers	Duodenum Mucosa	Duodenum
30	chr17:17009400-17015000	Enhancers	Adipose Nuclei	Adipose
31	chr17:17009400-17016000	Enhancers	Esophagus	oesophagus
32	chr17:17009400-17016200	Genic enhancers	A549	lung
33	chr17:17009400-17016600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr17:17009400-17020600	Enhancers	Lung	lung
35	chr17:17009600-17014400	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr17:17009600-17015400	Enhancers	Brain Hippocampus Middle	brain
37	chr17:17009600-17015400	Genic enhancers	Fetal Intestine Small	intestine
38	chr17:17009800-17013600	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr17:17009800-17014200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr17:17009800-17014200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr17:17009800-17014800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr17:17009800-17015000	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr17:17009800-17015600	Genic enhancers	HSMM	muscle
44	chr17:17009800-17017000	Enhancers	Brain Angular Gyrus	brain
45	chr17:17010000-17013000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr17:17010000-17014000	Enhancers	Brain Cingulate Gyrus	brain
47	chr17:17010000-17014000	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr17:17010000-17014200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr17:17010000-17014200	Enhancers	Spleen	Spleen
50	chr17:17010000-17014400	Genic enhancers	NHEK	skin

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