Variant report

Variant	rs60364428
Chromosome Location	chr17:16894858-16894859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16865818..16866414-chr17:16894372..16895239,2	MCF-7	breast:
2	chr17:16825450..16826310-chr17:16894599..16895108,2	MCF-7	breast:
3	chr17:16825418..16826776-chr17:16894392..16895364,7	MCF-7	breast:
4	chr17:16819016..16819930-chr17:16894369..16895346,5	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10048152	1.00[EUR][1000 genomes]
rs1131632	1.00[EUR][1000 genomes]
rs16961406	1.00[EUR][1000 genomes]
rs28829096	1.00[EUR][1000 genomes]
rs4485421	1.00[EUR][1000 genomes]
rs55792503	1.00[EUR][1000 genomes]
rs56247606	1.00[EUR][1000 genomes]
rs56343767	1.00[EUR][1000 genomes]
rs56912118	1.00[EUR][1000 genomes]
rs58169814	1.00[EUR][1000 genomes]
rs58442149	1.00[EUR][1000 genomes]
rs58690840	1.00[EUR][1000 genomes]
rs58702370	1.00[EUR][1000 genomes]
rs60029796	1.00[EUR][1000 genomes]
rs60192272	1.00[EUR][1000 genomes]
rs60332371	1.00[EUR][1000 genomes]
rs60545734	1.00[EUR][1000 genomes]
rs60697210	1.00[EUR][1000 genomes]
rs60890438	1.00[EUR][1000 genomes]
rs61024568	1.00[EUR][1000 genomes]
rs61218165	1.00[EUR][1000 genomes]
rs61608940	1.00[EUR][1000 genomes]
rs7219836	1.00[EUR][1000 genomes]
rs7223145	1.00[EUR][1000 genomes]
rs7223758	1.00[EUR][1000 genomes]
rs73979025	1.00[EUR][1000 genomes]
rs73979028	1.00[EUR][1000 genomes]
rs73979045	1.00[EUR][1000 genomes]
rs73979046	1.00[EUR][1000 genomes]
rs73979048	1.00[EUR][1000 genomes]
rs73979049	1.00[EUR][1000 genomes]
rs73979056	1.00[EUR][1000 genomes]
rs73979057	1.00[EUR][1000 genomes]
rs73979063	1.00[EUR][1000 genomes]
rs73979079	1.00[EUR][1000 genomes]
rs73979080	1.00[EUR][1000 genomes]
rs73979088	1.00[EUR][1000 genomes]
rs73979096	1.00[EUR][1000 genomes]
rs73979097	1.00[EUR][1000 genomes]
rs73981903	1.00[EUR][1000 genomes]
rs73981904	1.00[EUR][1000 genomes]
rs8079021	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2761948	chr17:16868561-16920568	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv907727	chr17:16892265-16938582	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16889800-16895000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:16889800-16895200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr17:16889800-16895800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:16890000-16895200	Enhancers	Fetal Thymus	thymus
5	chr17:16890400-16895000	Enhancers	Placenta	Placenta
6	chr17:16890600-16895200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr17:16890600-16895200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr17:16890600-16895200	Enhancers	Thymus	Thymus
9	chr17:16891000-16895000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:16891000-16895000	Enhancers	Fetal Stomach	stomach
11	chr17:16891000-16895200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr17:16891000-16895200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr17:16891200-16895200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr17:16891200-16895200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr17:16891200-16895200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr17:16892000-16895200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr17:16892200-16895000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr17:16892200-16895200	Enhancers	Primary T cells from cord blood	blood
19	chr17:16892200-16895200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr17:16892400-16895200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr17:16892600-16895800	Enhancers	Primary B cells from peripheral blood	blood
22	chr17:16893000-16895000	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr17:16893000-16895200	Enhancers	Primary B cells from cord blood	blood
24	chr17:16893000-16895200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr17:16893200-16895200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr17:16893200-16895200	Enhancers	Fetal Muscle Leg	muscle
27	chr17:16893400-16895000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr17:16893600-16895000	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr17:16893800-16895200	Enhancers	Dnd41	blood
30	chr17:16894000-16895000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr17:16894000-16896000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr17:16894000-16897800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr17:16894400-16895000	Enhancers	Primary hematopoietic stem cells	blood
34	chr17:16894400-16895200	Enhancers	Gastric	stomach
35	chr17:16894600-16895000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr17:16894600-16895000	Enhancers	Placenta Amnion	Placenta Amnion
37	chr17:16894600-16895000	Enhancers	Hela-S3	cervix
38	chr17:16894600-16895200	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr17:16894600-16895200	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr17:16894600-16895200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr17:16894600-16895200	Enhancers	Adipose Nuclei	Adipose
42	chr17:16894600-16895200	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr17:16894600-16895200	Enhancers	Brain Substantia Nigra	brain
44	chr17:16894600-16895200	Enhancers	Colon Smooth Muscle	Colon
45	chr17:16894600-16895200	Enhancers	Fetal Brain Male	brain
46	chr17:16894600-16895200	Enhancers	Fetal Intestine Large	intestine
47	chr17:16894600-16895200	Enhancers	Pancreas	Pancrea
48	chr17:16894600-16895200	Enhancers	Stomach Mucosa	stomach
49	chr17:16894600-16895200	Enhancers	A549	lung
50	chr17:16894800-16895000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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