Variant report

Variant	rs73979057
Chromosome Location	chr17:16954789-16954790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:16953457..16957915-chr17:16961428..16964742,4	K562	blood:
2	chr17:16954318..16955958-chr17:17023185..17024868,2	MCF-7	breast:
3	chr17:16954263..16957090-chr17:16957935..16960085,2	K562	blood:
4	chr17:16953800..16956981-chr17:16958258..16961708,4	MCF-7	breast:
5	chr17:16948833..16952528-chr17:16954016..16957501,7	K562	blood:
6	chr17:16944176..16948439-chr17:16950883..16955441,5	K562	blood:
7	chr17:16943909..16948439-chr17:16949478..16955691,9	K562	blood:
8	chr17:16950670..16953293-chr17:16954639..16957612,2	K562	blood:
9	chr17:16953007..16956653-chr17:16956657..16959834,3	MCF-7	breast:
10	chr17:16942782..16947288-chr17:16954210..16956855,5	MCF-7	breast:
11	chr17:16953727..16956148-chr17:16980520..16983644,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000225442	Chromatin interaction
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10048152	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1131632	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16961406	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28829096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4485421	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55792503	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56247606	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56343767	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56811379	0.81[AMR][1000 genomes]
rs56912118	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58169814	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58442149	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58690840	1.00[EUR][1000 genomes]
rs58702370	1.00[EUR][1000 genomes]
rs60029796	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60132526	0.92[AFR][1000 genomes]
rs60192272	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60332371	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60364428	1.00[EUR][1000 genomes]
rs60545734	1.00[EUR][1000 genomes]
rs60697210	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60890438	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61024568	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61218165	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61608940	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7219836	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7223145	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7223758	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7225496	1.00[EUR][1000 genomes]
rs73979025	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979028	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979045	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979046	1.00[EUR][1000 genomes]
rs73979048	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73979049	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73979056	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979063	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979080	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979088	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979096	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979097	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73981903	1.00[EUR][1000 genomes]
rs73981904	1.00[EUR][1000 genomes]
rs8079021	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16947600-16960200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:16947800-16955200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr17:16948400-16958600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr17:16948600-16958800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr17:16948600-16959000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr17:16948800-16958800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr17:16949000-16954800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:16949000-16955000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr17:16949000-16955000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr17:16949000-16956000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr17:16949000-16956200	Weak transcription	Fetal Brain Female	brain
12	chr17:16949000-16957600	Enhancers	NHDF-Ad	bronchial
13	chr17:16949000-16958400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr17:16949000-16962000	Enhancers	Fetal Heart	heart
15	chr17:16949000-16966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr17:16949000-16975200	Weak transcription	K562	blood
17	chr17:16949200-16954800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr17:16949200-16955000	Weak transcription	NH-A	brain
19	chr17:16949600-16954800	Weak transcription	HUVEC	blood vessel
20	chr17:16950200-16955800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr17:16950200-16955800	Weak transcription	Brain Germinal Matrix	brain
22	chr17:16950200-16962600	Weak transcription	Dnd41	blood
23	chr17:16950200-16968200	Enhancers	Psoas Muscle	Psoas
24	chr17:16950600-16955400	Genic enhancers	Hela-S3	cervix
25	chr17:16951000-16957200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr17:16951000-16958800	Enhancers	Right Ventricle	heart
27	chr17:16951200-16957800	Enhancers	Brain Anterior Caudate	brain
28	chr17:16951600-16954800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr17:16952000-16955000	Weak transcription	HSMMtube	muscle
30	chr17:16952000-16958400	Weak transcription	Aorta	Aorta
31	chr17:16952600-16960000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
33	chr17:16952800-16957000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr17:16953600-16955000	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr17:16953600-16955000	Enhancers	HSMM	muscle
36	chr17:16953600-16955400	Enhancers	Adipose Nuclei	Adipose
37	chr17:16953600-16957200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr17:16953600-16957200	Genic enhancers	Fetal Intestine Small	intestine
39	chr17:16953600-16960600	Enhancers	Left Ventricle	heart
40	chr17:16953600-16967600	Genic enhancers	Fetal Muscle Trunk	muscle
41	chr17:16953800-16955000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr17:16953800-16955000	Enhancers	HepG2	liver
43	chr17:16953800-16955200	Enhancers	Duodenum Mucosa	Duodenum
44	chr17:16953800-16955200	Enhancers	Osteobl	bone
45	chr17:16953800-16955800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr17:16953800-16956400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr17:16953800-16956400	Enhancers	Brain Angular Gyrus	brain
48	chr17:16953800-16956400	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr17:16953800-16956600	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr17:16953800-16956600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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