Variant report

Variant	rs73981919
Chromosome Location	chr17:17285704-17285705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1131632	1.00[EUR][1000 genomes]
rs16961406	1.00[EUR][1000 genomes]
rs28533026	1.00[EUR][1000 genomes]
rs55792503	1.00[EUR][1000 genomes]
rs56247606	1.00[EUR][1000 genomes]
rs58169814	1.00[EUR][1000 genomes]
rs58442149	1.00[EUR][1000 genomes]
rs59327849	1.00[EUR][1000 genomes]
rs60332371	1.00[EUR][1000 genomes]
rs60890438	1.00[EUR][1000 genomes]
rs61218165	1.00[EUR][1000 genomes]
rs6502589	1.00[ASN][1000 genomes]
rs7223758	1.00[EUR][1000 genomes]
rs7225496	1.00[EUR][1000 genomes]
rs73979096	1.00[EUR][1000 genomes]
rs73979097	1.00[EUR][1000 genomes]
rs73981903	1.00[EUR][1000 genomes]
rs73981904	1.00[EUR][1000 genomes]
rs73981918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73981940	1.00[EUR][1000 genomes]
rs73981946	1.00[EUR][1000 genomes]
rs9897035	1.00[EUR][1000 genomes]
rs9905658	1.00[EUR][1000 genomes]
rs9909266	1.00[ASN][1000 genomes]
rs9910779	1.00[ASN][1000 genomes]
rs9913824	1.00[EUR][1000 genomes]
rs9914436	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
3	nsv960426	chr17:17285422-17287949	Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17281000-17288600	Weak transcription	Fetal Lung	lung
2	chr17:17281200-17287400	Weak transcription	Fetal Brain Female	brain
3	chr17:17281600-17290600	Weak transcription	Esophagus	oesophagus
4	chr17:17282200-17285800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr17:17282200-17285800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr17:17282200-17285800	Enhancers	Brain Anterior Caudate	brain
7	chr17:17282200-17285800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr17:17282200-17285800	Enhancers	Brain Substantia Nigra	brain
9	chr17:17282200-17286200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr17:17282400-17286000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr17:17282800-17285800	Enhancers	Fetal Thymus	thymus
12	chr17:17284000-17285800	Enhancers	Fetal Muscle Leg	muscle
13	chr17:17284000-17287200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr17:17284200-17290000	Weak transcription	Pancreas	Pancrea
15	chr17:17284400-17285800	Enhancers	Fetal Brain Male	brain
16	chr17:17284400-17287400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr17:17284800-17286600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr17:17285000-17285800	Enhancers	Hela-S3	cervix
19	chr17:17285200-17287200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:17285400-17285800	Bivalent Enhancer	HUVEC	blood vessel
21	chr17:17285400-17286000	Bivalent Enhancer	HepG2	liver
22	chr17:17285400-17286800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr17:17285400-17288400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr17:17285400-17288800	Weak transcription	Brain Angular Gyrus	brain
25	chr17:17285600-17287800	Weak transcription	Brain Germinal Matrix	brain
26	chr17:17285600-17288400	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links