Variant report

No.	Distal block	Cell Line	Cell type
1	chr17:17290388..17293287-chr17:17293294..17295342,3	MCF-7	breast:
2	chr17:17289655..17293959-chr17:17349314..17352438,5	MCF-7	breast:
3	chr17:17291681..17293275-chr17:17315308..17316852,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1131632	1.00[EUR][1000 genomes]
rs16961406	1.00[EUR][1000 genomes]
rs55792503	1.00[EUR][1000 genomes]
rs56247606	1.00[EUR][1000 genomes]
rs58169814	1.00[EUR][1000 genomes]
rs58442149	1.00[EUR][1000 genomes]
rs59327849	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60332371	1.00[EUR][1000 genomes]
rs60890438	1.00[EUR][1000 genomes]
rs61218165	1.00[EUR][1000 genomes]
rs7225496	1.00[EUR][1000 genomes]
rs73981903	1.00[EUR][1000 genomes]
rs73981904	1.00[EUR][1000 genomes]
rs73981918	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73981919	1.00[EUR][1000 genomes]
rs73981940	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73981946	1.00[EUR][1000 genomes]
rs9897035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9905658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9913824	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9914436	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17289800-17293400	Weak transcription	Dnd41	blood
2	chr17:17291800-17294400	Weak transcription	GM12878-XiMat	blood
3	chr17:17291800-17294800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:17291800-17295200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:17292400-17295200	Weak transcription	Fetal Muscle Leg	muscle
6	chr17:17292600-17295000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr17:17292600-17296400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr17:17292600-17298000	Weak transcription	Adipose Nuclei	Adipose

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