Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:17258537..17261520-chr17:17290146..17293123,2	MCF-7	breast:
2	chr17:17278849..17281558-chr17:17290486..17292840,2	K562	blood:
3	chr17:17290388..17293287-chr17:17293294..17295342,3	MCF-7	breast:
4	chr17:17290050..17292751-chr17:17397207..17401029,5	MCF-7	breast:
5	chr17:17290703..17292981-chr17:17343527..17346178,2	MCF-7	breast:
6	chr17:17258751..17260211-chr17:17291478..17292805,6	MCF-7	breast:
7	chr17:17289655..17293959-chr17:17349314..17352438,5	MCF-7	breast:
8	chr17:17290815..17292388-chr17:17395387..17396915,2	MCF-7	breast:
9	chr17:17291681..17293275-chr17:17315308..17316852,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108551	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1131632	1.00[EUR][1000 genomes]
rs16961406	1.00[EUR][1000 genomes]
rs28533026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55792503	1.00[EUR][1000 genomes]
rs56247606	1.00[EUR][1000 genomes]
rs58169814	1.00[EUR][1000 genomes]
rs58442149	1.00[EUR][1000 genomes]
rs59327849	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60332371	1.00[EUR][1000 genomes]
rs60890438	1.00[EUR][1000 genomes]
rs61218165	1.00[EUR][1000 genomes]
rs7225496	1.00[EUR][1000 genomes]
rs73981903	1.00[EUR][1000 genomes]
rs73981904	1.00[EUR][1000 genomes]
rs73981918	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73981919	1.00[EUR][1000 genomes]
rs73981940	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73981946	1.00[EUR][1000 genomes]
rs9905658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9913824	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9914436	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17287600-17292400	Enhancers	Fetal Muscle Leg	muscle
2	chr17:17287600-17292600	Enhancers	Fetal Muscle Trunk	muscle
3	chr17:17289800-17293400	Weak transcription	Dnd41	blood
4	chr17:17290000-17292400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
5	chr17:17291000-17292400	Enhancers	Right Ventricle	heart
6	chr17:17291200-17292600	Enhancers	Adipose Nuclei	Adipose
7	chr17:17291400-17292800	Weak transcription	Gastric	stomach
8	chr17:17291800-17292400	Enhancers	HepG2	liver
9	chr17:17291800-17294400	Weak transcription	GM12878-XiMat	blood
10	chr17:17291800-17294800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr17:17291800-17295200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr17:17292000-17292400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr17:17292000-17292400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
14	chr17:17292200-17292800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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