Variant report

Variant	rs6502589
Chromosome Location	chr17:17285817-17285818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:89629617..89632249-chr17:17285725..17287253,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57228434	0.94[EUR][1000 genomes]
rs60974286	0.97[EUR][1000 genomes]
rs6502588	0.97[EUR][1000 genomes]
rs6502590	1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs7222345	1.00[JPT][hapmap]
rs73981919	1.00[ASN][1000 genomes]
rs9909266	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910779	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9915901	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
3	nsv960426	chr17:17285422-17287949	Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17281000-17288600	Weak transcription	Fetal Lung	lung
2	chr17:17281200-17287400	Weak transcription	Fetal Brain Female	brain
3	chr17:17281600-17290600	Weak transcription	Esophagus	oesophagus
4	chr17:17282200-17286200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr17:17282400-17286000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr17:17284000-17287200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:17284200-17290000	Weak transcription	Pancreas	Pancrea
8	chr17:17284400-17287400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr17:17284800-17286600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr17:17285200-17287200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr17:17285400-17286000	Bivalent Enhancer	HepG2	liver
12	chr17:17285400-17286800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:17285400-17288400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr17:17285400-17288800	Weak transcription	Brain Angular Gyrus	brain
15	chr17:17285600-17287800	Weak transcription	Brain Germinal Matrix	brain
16	chr17:17285600-17288400	Weak transcription	Brain Hippocampus Middle	brain
17	chr17:17285800-17286400	Weak transcription	Fetal Brain Male	brain
18	chr17:17285800-17287400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr17:17285800-17287600	Weak transcription	Fetal Muscle Leg	muscle
20	chr17:17285800-17288200	Weak transcription	Brain Substantia Nigra	brain
21	chr17:17285800-17288400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr17:17285800-17288800	Weak transcription	Brain Anterior Caudate	brain
23	chr17:17285800-17290800	Weak transcription	Hela-S3	cervix

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