Variant report

Variant	rs56816340
Chromosome Location	chr4:128010006-128010007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58845525	0.89[AFR][1000 genomes]
rs60435611	0.84[AFR][1000 genomes]
rs60891697	0.95[AFR][1000 genomes]
rs73846405	1.00[AFR][1000 genomes]
rs73846487	0.89[AFR][1000 genomes]
rs73848058	0.90[AFR][1000 genomes]
rs73848059	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353295	chr4:127994396-128017617	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128009200-128011000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:128009800-128010200	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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