Variant report

Variant	rs60435611
Chromosome Location	chr4:127891145-127891146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56816340	0.84[AFR][1000 genomes]
rs73846405	0.84[AFR][1000 genomes]
rs73848047	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127883000-127892400	Weak transcription	K562	blood
2	chr4:127889800-127891200	Weak transcription	Aorta	Aorta
3	chr4:127890000-127891400	Enhancers	Fetal Stomach	stomach
4	chr4:127890200-127891400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:127890400-127891200	Enhancers	Stomach Smooth Muscle	stomach
6	chr4:127890400-127891400	Enhancers	Rectal Smooth Muscle	rectum
7	chr4:127890600-127891400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:127890600-127891400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:127890800-127891200	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr4:127890800-127891400	Enhancers	Fetal Lung	lung
11	chr4:127890800-127891400	Enhancers	Fetal Muscle Leg	muscle
12	chr4:127891000-127891400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:127891000-127891400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:127891000-127891400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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