Variant report

Variant	rs56840708
Chromosome Location	chr12:121919543-121919544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121904480..121906372-chr12:121919407..121922126,2	MCF-7	breast:
2	chr12:121917699..121920118-chr12:121974366..121976520,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089094	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28625063	1.00[EUR][1000 genomes]
rs57304385	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57913468	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58035798	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58927387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59078140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59834647	0.90[ASN][1000 genomes]
rs60436465	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7132535	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9788020	1.00[EUR][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121905800-121923200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:121906000-121921400	Weak transcription	Thymus	Thymus
3	chr12:121906000-121927400	Weak transcription	Lung	lung
4	chr12:121906000-121927600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:121906000-121927600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr12:121906000-121937800	Weak transcription	Aorta	Aorta
7	chr12:121906000-121938000	Weak transcription	Left Ventricle	heart
8	chr12:121906200-121919800	Weak transcription	Fetal Thymus	thymus
9	chr12:121906200-121920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr12:121906200-121922800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr12:121906200-121927400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr12:121906200-121927600	Weak transcription	Spleen	Spleen
13	chr12:121906200-121928200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr12:121906200-121938000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr12:121906400-121920400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:121906400-121921400	Weak transcription	Fetal Brain Male	brain
17	chr12:121906400-121921600	Weak transcription	Primary T cells from cord blood	blood
18	chr12:121906400-121927600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:121906400-121929000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr12:121906400-121933400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr12:121906400-121933400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr12:121906400-121933800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr12:121906600-121921000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr12:121906600-121927400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr12:121906600-121927600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr12:121906600-121927600	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr12:121906600-121927600	Weak transcription	Fetal Brain Female	brain
28	chr12:121906600-121928000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr12:121906600-121938000	Weak transcription	NHDF-Ad	bronchial
30	chr12:121908400-121927600	Weak transcription	Primary B cells from cord blood	blood
31	chr12:121908400-121928000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr12:121908600-121920600	Weak transcription	Fetal Muscle Leg	muscle
33	chr12:121908600-121927600	Weak transcription	Brain Hippocampus Middle	brain
34	chr12:121908800-121931400	Weak transcription	Fetal Lung	lung
35	chr12:121909200-121920600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr12:121909600-121919800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr12:121909600-121920400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr12:121909600-121927600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr12:121909800-121922000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr12:121910400-121920400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr12:121910600-121928600	Weak transcription	Fetal Kidney	kidney
42	chr12:121911000-121921600	Weak transcription	HepG2	liver
43	chr12:121911000-121927600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr12:121911200-121920000	Weak transcription	Liver	Liver
45	chr12:121911400-121946400	Weak transcription	Pancreas	Pancrea
46	chr12:121913000-121938000	Weak transcription	Brain Angular Gyrus	brain
47	chr12:121913200-121920000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr12:121914200-121920400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr12:121914800-121922400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr12:121915000-121919800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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