Variant report

Variant	rs60436465
Chromosome Location	chr12:121898985-121898986
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121893194..121896214-chr12:121897767..121900813,4	K562	blood:
2	chr12:121891205..121893580-chr12:121898932..121901141,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28625063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56840708	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57304385	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57913468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58035798	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58927387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59078140	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59834647	0.90[ASN][1000 genomes]
rs7132535	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7137329	1.00[AMR][1000 genomes]
rs9788020	1.00[EUR][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121861400-121903600	Weak transcription	Right Atrium	heart
2	chr12:121879200-121903400	Weak transcription	Hela-S3	cervix
3	chr12:121879200-121904000	Weak transcription	Small Intestine	intestine
4	chr12:121880000-121903600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr12:121880000-121904000	Weak transcription	Aorta	Aorta
6	chr12:121880800-121902800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:121881800-121903400	Weak transcription	A549	lung
8	chr12:121883200-121903600	Weak transcription	Brain Anterior Caudate	brain
9	chr12:121883400-121903200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:121885600-121903600	Weak transcription	Liver	Liver
11	chr12:121887200-121902200	Weak transcription	Fetal Brain Male	brain
12	chr12:121889400-121902000	Weak transcription	K562	blood
13	chr12:121889800-121903400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr12:121890200-121899200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr12:121890200-121903400	Weak transcription	Fetal Lung	lung
16	chr12:121890400-121902800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr12:121890400-121903400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr12:121890800-121902200	Weak transcription	HepG2	liver
19	chr12:121890800-121902200	Weak transcription	NHLF	lung
20	chr12:121890800-121902800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr12:121890800-121903400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr12:121890800-121903400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr12:121890800-121903400	Weak transcription	Fetal Intestine Large	intestine
24	chr12:121890800-121903400	Weak transcription	HMEC	breast
25	chr12:121890800-121903400	Weak transcription	NHEK	skin
26	chr12:121890800-121903600	Weak transcription	NHDF-Ad	bronchial
27	chr12:121891000-121899400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr12:121891000-121899800	Weak transcription	Brain Germinal Matrix	brain
29	chr12:121891000-121902200	Weak transcription	Pancreas	Pancrea
30	chr12:121891000-121903200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr12:121891000-121903200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr12:121891000-121903400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr12:121891200-121902000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr12:121891200-121902200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr12:121891200-121902200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr12:121891200-121902400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr12:121891200-121903600	Weak transcription	Colonic Mucosa	Colon
38	chr12:121891200-121903800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr12:121891400-121899000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr12:121891400-121902200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr12:121891400-121903400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr12:121891400-121903600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr12:121891800-121904000	Weak transcription	Lung	lung
44	chr12:121892200-121903400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr12:121892800-121902200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr12:121892800-121903600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr12:121893000-121899200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr12:121893000-121902200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr12:121893200-121899000	Weak transcription	Fetal Muscle Leg	muscle
50	chr12:121893200-121903600	Weak transcription	Brain Angular Gyrus	brain

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