Variant report

Variant rs56848605
Chromosome Location chr18:29080647-29080648
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:29079400-29080800 Enhancers Primary hematopoietic stem cells short term culture blood
2 chr18:29079600-29080800 Enhancers Fetal Heart heart
3 chr18:29079600-29080800 Enhancers Fetal Intestine Large intestine
4 chr18:29079600-29080800 Flanking Active TSS Fetal Intestine Small intestine
5 chr18:29079800-29080800 Enhancers Hela-S3 cervix
6 chr18:29079800-29081400 Enhancers iPS-18 Cell Line embryonic stem cell
7 chr18:29079800-29081600 Enhancers Breast Myoepithelial Primary Cells Breast
8 chr18:29079800-29081600 Enhancers Stomach Mucosa stomach
9 chr18:29079800-29081800 Enhancers Placenta Amnion Placenta Amnion
10 chr18:29080000-29081400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr18:29080000-29081600 Enhancers H9 Cell Line embryonic stem cell
12 chr18:29080200-29080800 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
13 chr18:29080200-29080800 Enhancers Gastric stomach
14 chr18:29080200-29081800 Enhancers Pancreas Pancrea
15 chr18:29080400-29080800 Enhancers H1 Cell Line embryonic stem cell
16 chr18:29080400-29081000 Enhancers ES-I3 Cell Line embryonic stem cell
17 chr18:29080400-29081800 Enhancers HepG2 liver
18 chr18:29080400-29081800 Genic enhancers NHEK skin
19 chr18:29080400-29085800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr18:29080400-29091000 Weak transcription Colonic Mucosa Colon
21 chr18:29080600-29080800 Genic enhancers HUES48 Cell Line embryonic stem cell
22 chr18:29080600-29080800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr18:29080600-29080800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr18:29080600-29080800 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr18:29080600-29080800 Bivalent/Poised TSS Rectal Mucosa Donor 29 rectum
26 chr18:29080600-29081000 Enhancers HUES64 Cell Line embryonic stem cell
27 chr18:29080600-29081400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
28 chr18:29080600-29081600 Enhancers HUES6 Cell Line embryonic stem cell
29 chr18:29080600-29081800 Enhancers iPS-20b Cell Line embryonic stem cell
30 chr18:29080600-29081800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr18:29080600-29081800 Flanking Active TSS GM12878-XiMat blood
32 chr18:29080600-29082800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr18:29080600-29083000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr18:29080600-29083200 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr18:29080600-29084000 Weak transcription K562 blood
36 chr18:29080600-29084400 Weak transcription Duodenum Mucosa Duodenum
37 chr18:29080600-29084600 Weak transcription Right Atrium heart
38 chr18:29080600-29084600 Weak transcription Right Ventricle heart
39 chr18:29080600-29088400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr18:29080600-29088600 Weak transcription HMEC breast
41 chr18:29080600-29088800 Weak transcription A549 lung
42 chr18:29080600-29089600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr18:29080600-29093200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
44 chr18:29080600-29100000 Weak transcription Primary hematopoietic stem cells blood
45 chr18:29080600-29100400 Weak transcription Fetal Thymus thymus

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