Variant report
| Variant | rs56862868 |
|---|---|
| Chromosome Location | chr7:108516316-108516317 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs55667297 | 1.00[AMR][1000 genomes] |
| rs57973513 | 1.00[AMR][1000 genomes] |
| rs58360929 | 1.00[AMR][1000 genomes] |
| rs58388107 | 1.00[AMR][1000 genomes] |
| rs59149625 | 1.00[AMR][1000 genomes] |
| rs59529271 | 1.00[AMR][1000 genomes] |
| rs73412667 | 1.00[AMR][1000 genomes] |
| rs73418344 | 1.00[AMR][1000 genomes] |
| rs73418346 | 1.00[AMR][1000 genomes] |
| rs73418637 | 1.00[AMR][1000 genomes] |
| rs73418638 | 1.00[AMR][1000 genomes] |
| rs73418688 | 1.00[AMR][1000 genomes] |
| rs73418699 | 1.00[AMR][1000 genomes] |
| rs73420509 | 1.00[AMR][1000 genomes] |
| rs73420516 | 1.00[AMR][1000 genomes] |
| rs73420566 | 1.00[AMR][1000 genomes] |
| rs73420568 | 1.00[AMR][1000 genomes] |
| rs73422359 | 1.00[AMR][1000 genomes] |
| rs73422361 | 1.00[AMR][1000 genomes] |
| rs73422373 | 1.00[AMR][1000 genomes] |
| rs73422378 | 1.00[AMR][1000 genomes] |
| rs73422396 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817371 | chr7:108199882-108649799 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031096 | chr7:108334543-108596014 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv888945 | chr7:108445757-108521842 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:108515600-108517800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
