Variant report

Variant	rs73420516
Chromosome Location	chr7:108487274-108487275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10241807	1.00[AMR][1000 genomes]
rs55667297	1.00[AMR][1000 genomes]
rs56862868	1.00[AMR][1000 genomes]
rs57973513	1.00[AMR][1000 genomes]
rs58360929	1.00[AMR][1000 genomes]
rs58388107	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59149625	1.00[AMR][1000 genomes]
rs59529271	1.00[AMR][1000 genomes]
rs73412667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416419	1.00[AMR][1000 genomes]
rs73416423	1.00[AMR][1000 genomes]
rs73416424	1.00[AMR][1000 genomes]
rs73416429	1.00[AMR][1000 genomes]
rs73416436	1.00[AMR][1000 genomes]
rs73416438	1.00[AMR][1000 genomes]
rs73416447	1.00[AMR][1000 genomes]
rs73416457	1.00[AMR][1000 genomes]
rs73416458	1.00[AMR][1000 genomes]
rs73416464	1.00[AMR][1000 genomes]
rs73418344	1.00[AMR][1000 genomes]
rs73418346	1.00[AMR][1000 genomes]
rs73418637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73418638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73418688	1.00[AMR][1000 genomes]
rs73418699	1.00[AMR][1000 genomes]
rs73420509	1.00[AMR][1000 genomes]
rs73420566	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420568	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422359	1.00[AMR][1000 genomes]
rs73422361	1.00[AMR][1000 genomes]
rs73422373	1.00[AMR][1000 genomes]
rs73422378	1.00[AMR][1000 genomes]
rs73422396	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1031096	chr7:108334543-108596014	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888945	chr7:108445757-108521842	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108486000-108487600	Enhancers	Brain Germinal Matrix	brain
2	chr7:108487000-108487600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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