Variant report

Variant	rs73422359
Chromosome Location	chr7:108353193-108353194
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10241807	1.00[AMR][1000 genomes]
rs10251373	1.00[AMR][1000 genomes]
rs10257081	1.00[AMR][1000 genomes]
rs55667297	1.00[AMR][1000 genomes]
rs56862868	1.00[AMR][1000 genomes]
rs57973513	1.00[AMR][1000 genomes]
rs58360929	1.00[AMR][1000 genomes]
rs58388107	1.00[AMR][1000 genomes]
rs58941051	1.00[AMR][1000 genomes]
rs59149625	1.00[AMR][1000 genomes]
rs59529271	1.00[AMR][1000 genomes]
rs73412667	1.00[AMR][1000 genomes]
rs73414413	1.00[AMR][1000 genomes]
rs73414414	1.00[AMR][1000 genomes]
rs73414423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414428	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414430	1.00[AMR][1000 genomes]
rs73414432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414440	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414445	1.00[AMR][1000 genomes]
rs73416413	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416419	1.00[AMR][1000 genomes]
rs73416423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416429	1.00[AMR][1000 genomes]
rs73416436	1.00[AMR][1000 genomes]
rs73416438	1.00[AMR][1000 genomes]
rs73416447	1.00[AMR][1000 genomes]
rs73416457	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416464	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73418344	1.00[AMR][1000 genomes]
rs73418346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73418637	1.00[AMR][1000 genomes]
rs73418638	1.00[AMR][1000 genomes]
rs73418688	1.00[AMR][1000 genomes]
rs73418699	1.00[AMR][1000 genomes]
rs73420509	1.00[AMR][1000 genomes]
rs73420516	1.00[AMR][1000 genomes]
rs73420566	1.00[AMR][1000 genomes]
rs73420568	1.00[AMR][1000 genomes]
rs73422361	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422373	1.00[AMR][1000 genomes]
rs73422378	1.00[AMR][1000 genomes]
rs73422396	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1023651	chr7:108303048-108385180	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1031096	chr7:108334543-108596014	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv888944	chr7:108348785-108433790	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv511985	chr7:108351650-108354930	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2493183	chr7:108352141-108353757	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv2205957	chr7:108352678-108353364	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3476569	chr7:108352743-108353275	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3503089	chr7:108352748-108353278	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3503088	chr7:108352758-108353281	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	nsv981780	chr7:108352758-108409711	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3503087	chr7:108352771-108353207	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3476572	chr7:108352780-108353238	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3476573	chr7:108352780-108353241	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3476570	chr7:108352791-108353198	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv3503091	chr7:108352791-108353235	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv3503090	chr7:108352793-108353226	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3419275	chr7:108352813-108353196	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108352200-108356800	Weak transcription	Fetal Stomach	stomach
2	chr7:108352200-108357000	Weak transcription	Dnd41	blood
3	chr7:108352400-108354600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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