Variant report

Variant	rs58941051
Chromosome Location	chr7:108268827-108268828
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10241807	1.00[AMR][1000 genomes]
rs10251373	1.00[AMR][1000 genomes]
rs10257081	1.00[AMR][1000 genomes]
rs57973513	1.00[AMR][1000 genomes]
rs73412667	1.00[AMR][1000 genomes]
rs73414413	1.00[AMR][1000 genomes]
rs73414414	1.00[AMR][1000 genomes]
rs73414423	1.00[AMR][1000 genomes]
rs73414428	1.00[AMR][1000 genomes]
rs73414430	1.00[AMR][1000 genomes]
rs73414432	1.00[AMR][1000 genomes]
rs73414438	1.00[AMR][1000 genomes]
rs73414440	1.00[AMR][1000 genomes]
rs73414443	1.00[AMR][1000 genomes]
rs73414445	1.00[AMR][1000 genomes]
rs73416413	1.00[AMR][1000 genomes]
rs73416415	1.00[AMR][1000 genomes]
rs73416419	1.00[AMR][1000 genomes]
rs73416423	1.00[AMR][1000 genomes]
rs73416424	1.00[AMR][1000 genomes]
rs73416429	1.00[AMR][1000 genomes]
rs73416436	1.00[AMR][1000 genomes]
rs73416438	1.00[AMR][1000 genomes]
rs73416447	1.00[AMR][1000 genomes]
rs73416457	1.00[AMR][1000 genomes]
rs73416458	1.00[AMR][1000 genomes]
rs73416464	1.00[AMR][1000 genomes]
rs73418344	1.00[AMR][1000 genomes]
rs73418346	1.00[AMR][1000 genomes]
rs73418637	1.00[AMR][1000 genomes]
rs73418638	1.00[AMR][1000 genomes]
rs73422359	1.00[AMR][1000 genomes]
rs73422361	1.00[AMR][1000 genomes]
rs73422373	1.00[AMR][1000 genomes]
rs73422378	1.00[AMR][1000 genomes]
rs73422396	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108257800-108270800	Weak transcription	Right Atrium	heart
2	chr7:108266800-108270400	Weak transcription	Adipose Nuclei	Adipose
3	chr7:108268400-108269600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr7:108268800-108269200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:108268800-108271800	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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