The 2.0 version of rSNPBase

Variant report

Variant rs56875328
Chromosome Location chr1:45443102-45443103
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45389200-45450200 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr1:45392800-45443200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:45414000-45443200 Weak transcription Pancreas Pancrea
4 chr1:45414000-45450800 Weak transcription Rectal Smooth Muscle rectum
5 chr1:45414000-45451000 Weak transcription Spleen Spleen
6 chr1:45416600-45443600 Weak transcription Psoas Muscle Psoas
7 chr1:45421000-45450800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr1:45421400-45443400 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:45424600-45443200 Weak transcription Thymus Thymus
10 chr1:45424800-45445600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr1:45425000-45445600 Weak transcription Aorta Aorta
12 chr1:45425600-45443400 Weak transcription HSMMtube muscle
13 chr1:45430800-45450800 Weak transcription Brain Substantia Nigra brain
14 chr1:45432200-45443800 Weak transcription H9 Cell Line embryonic stem cell
15 chr1:45433200-45451000 Weak transcription Primary neutrophils fromperipheralblood blood
16 chr1:45434400-45450800 Weak transcription Small Intestine intestine
17 chr1:45435600-45444200 Strong transcription Primary T cells from cord blood blood
18 chr1:45435600-45447400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr1:45435600-45447600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr1:45436000-45447000 Strong transcription Fetal Muscle Leg muscle
21 chr1:45436200-45446800 Strong transcription Fetal Adrenal Gland Adrenal Gland
22 chr1:45436400-45450800 Weak transcription HMEC breast
23 chr1:45436600-45450800 Weak transcription Stomach Mucosa stomach
24 chr1:45436800-45445000 Weak transcription Hela-S3 cervix
25 chr1:45437200-45444200 Strong transcription Skeletal Muscle Female skeletal muscle
26 chr1:45437200-45446800 Strong transcription Fetal Thymus thymus
27 chr1:45437400-45444800 Weak transcription HUVEC blood vessel
28 chr1:45437400-45446600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr1:45437400-45447400 Strong transcription Primary hematopoietic stem cells short term culture blood
30 chr1:45437600-45446800 Strong transcription Cortex derived primary cultured neurospheres brain
31 chr1:45437600-45447000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr1:45437600-45447200 Strong transcription Fetal Muscle Trunk muscle
33 chr1:45437800-45446800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr1:45438000-45451000 Weak transcription A549 lung
35 chr1:45438200-45446800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
36 chr1:45438200-45447200 Strong transcription Primary T cells fromperipheralblood blood
37 chr1:45438200-45450800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
38 chr1:45438400-45444200 Strong transcription Muscle Satellite Cultured Cells --
39 chr1:45438400-45446800 Strong transcription Breast Myoepithelial Primary Cells Breast
40 chr1:45438400-45446800 Strong transcription Duodenum Mucosa Duodenum
41 chr1:45438400-45447000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr1:45438400-45447200 Strong transcription Dnd41 blood
43 chr1:45438400-45451000 Weak transcription Pancreatic Islets Pancreatic Islet
44 chr1:45438600-45444200 Strong transcription Skeletal Muscle Male skeletal muscle
45 chr1:45438600-45447200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr1:45438600-45450800 Weak transcription iPS-15b Cell Line embryonic stem cell
47 chr1:45439400-45445200 Strong transcription Duodenum Smooth Muscle Duodenum
48 chr1:45439600-45446800 Strong transcription Primary T helper cells fromperipheralblood blood
49 chr1:45439600-45447200 Strong transcription Monocytes-CD14+_RO01746 blood
50 chr1:45439800-45443200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015