Variant report

Variant	rs56906398
Chromosome Location	chr3:135217246-135217247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11918077	1.00[EUR][1000 genomes]
rs11918226	1.00[EUR][1000 genomes]
rs11918227	1.00[EUR][1000 genomes]
rs1374769	1.00[EUR][1000 genomes]
rs1447599	1.00[EUR][1000 genomes]
rs16843219	1.00[EUR][1000 genomes]
rs3843972	1.00[EUR][1000 genomes]
rs56129221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58194709	1.00[EUR][1000 genomes]
rs58701539	1.00[EUR][1000 genomes]
rs59443908	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59696952	1.00[EUR][1000 genomes]
rs60229691	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60382383	1.00[EUR][1000 genomes]
rs60843403	1.00[EUR][1000 genomes]
rs6439569	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6766923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6774036	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6782493	1.00[EUR][1000 genomes]
rs6792545	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6802744	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6802755	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6804674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6805595	1.00[EUR][1000 genomes]
rs72987539	1.00[EUR][1000 genomes]
rs72987540	1.00[EUR][1000 genomes]
rs72987558	1.00[EUR][1000 genomes]
rs72987563	1.00[EUR][1000 genomes]
rs72987579	1.00[AMR][1000 genomes]
rs72989740	1.00[EUR][1000 genomes]
rs72989744	1.00[EUR][1000 genomes]
rs72989761	1.00[EUR][1000 genomes]
rs7610973	1.00[EUR][1000 genomes]
rs7614390	1.00[EUR][1000 genomes]
rs7626827	1.00[EUR][1000 genomes]
rs7637843	1.00[EUR][1000 genomes]
rs7639153	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7640835	1.00[EUR][1000 genomes]
rs7644294	1.00[EUR][1000 genomes]
rs7644964	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7652797	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135210200-135221400	Weak transcription	Fetal Brain Male	brain
2	chr3:135210600-135222600	Weak transcription	Psoas Muscle	Psoas
3	chr3:135217200-135217400	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links