Variant report

Variant	rs60229691
Chromosome Location	chr3:135217643-135217644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135217363..135219573-chr3:135220450..135222728,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11918077	1.00[EUR][1000 genomes]
rs11918226	1.00[EUR][1000 genomes]
rs11918227	1.00[EUR][1000 genomes]
rs1374769	1.00[EUR][1000 genomes]
rs1447599	1.00[EUR][1000 genomes]
rs16843219	1.00[EUR][1000 genomes]
rs3843972	1.00[EUR][1000 genomes]
rs56129221	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56906398	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58194709	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58701539	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59443908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59696952	1.00[EUR][1000 genomes]
rs60382383	1.00[EUR][1000 genomes]
rs60843403	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6439569	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6766923	1.00[EUR][1000 genomes]
rs6774036	1.00[EUR][1000 genomes]
rs6782493	1.00[EUR][1000 genomes]
rs6792545	1.00[EUR][1000 genomes]
rs6802744	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6802755	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6804674	1.00[EUR][1000 genomes]
rs6805595	1.00[EUR][1000 genomes]
rs72987539	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72987540	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72987558	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72987563	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72989740	1.00[EUR][1000 genomes]
rs72989744	1.00[EUR][1000 genomes]
rs72989761	1.00[EUR][1000 genomes]
rs7610973	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7614390	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7626827	1.00[EUR][1000 genomes]
rs7637843	1.00[EUR][1000 genomes]
rs7639153	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7640835	1.00[EUR][1000 genomes]
rs7644294	1.00[EUR][1000 genomes]
rs7644964	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7652797	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135210200-135221400	Weak transcription	Fetal Brain Male	brain
2	chr3:135210600-135222600	Weak transcription	Psoas Muscle	Psoas
3	chr3:135217400-135217800	Enhancers	Brain Cingulate Gyrus	brain
4	chr3:135217400-135218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:135217400-135218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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