Variant report

Variant	rs59696952
Chromosome Location	chr3:135223049-135223050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:134319632..134320209-chr3:135222435..135223348,2	K562	blood:
2	chr3:135130991..135131960-chr3:135222470..135223123,2	MCF-7	breast:
3	chr3:134880013..134880813-chr3:135222472..135223108,2	MCF-7	breast:
4	chr3:134319400..134320351-chr3:135222419..135223319,2	MCF-7	breast:
5	chr3:135222795..135223348-chr3:135614058..135614678,2	MCF-7	breast:
6	chr3:134513381..134514586-chr3:135222393..135223990,13	MCF-7	breast:
7	chr3:134857366..134857914-chr3:135222828..135223498,2	MCF-7	breast:
8	chr3:134513166..134514322-chr3:135222261..135223395,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000154928	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11918077	1.00[EUR][1000 genomes]
rs11918226	1.00[EUR][1000 genomes]
rs11918227	1.00[EUR][1000 genomes]
rs1374769	1.00[EUR][1000 genomes]
rs1447599	1.00[EUR][1000 genomes]
rs16843041	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16843219	1.00[EUR][1000 genomes]
rs3843972	1.00[EUR][1000 genomes]
rs56129221	1.00[EUR][1000 genomes]
rs56906398	1.00[EUR][1000 genomes]
rs58194709	1.00[EUR][1000 genomes]
rs58701539	1.00[EUR][1000 genomes]
rs59443908	1.00[EUR][1000 genomes]
rs60229691	1.00[EUR][1000 genomes]
rs60382383	1.00[EUR][1000 genomes]
rs60843403	1.00[EUR][1000 genomes]
rs6439569	1.00[EUR][1000 genomes]
rs6766923	1.00[EUR][1000 genomes]
rs6774036	1.00[EUR][1000 genomes]
rs6782493	1.00[EUR][1000 genomes]
rs6792545	1.00[EUR][1000 genomes]
rs6802744	1.00[EUR][1000 genomes]
rs6802755	1.00[EUR][1000 genomes]
rs6804674	1.00[EUR][1000 genomes]
rs6805595	1.00[EUR][1000 genomes]
rs72987539	1.00[EUR][1000 genomes]
rs72987540	1.00[EUR][1000 genomes]
rs72987558	1.00[EUR][1000 genomes]
rs72987563	1.00[EUR][1000 genomes]
rs72989740	1.00[EUR][1000 genomes]
rs72989744	1.00[EUR][1000 genomes]
rs72989761	1.00[EUR][1000 genomes]
rs7610973	1.00[EUR][1000 genomes]
rs7614390	1.00[EUR][1000 genomes]
rs7626827	1.00[EUR][1000 genomes]
rs7637843	1.00[EUR][1000 genomes]
rs7639153	1.00[EUR][1000 genomes]
rs7640835	1.00[EUR][1000 genomes]
rs7644294	1.00[EUR][1000 genomes]
rs7644964	1.00[EUR][1000 genomes]
rs7652797	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv527433	chr3:135221504-135225249	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518089	chr3:135221504-135232994	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135221400-135223400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:135222200-135223200	Active TSS	Brain Cingulate Gyrus	brain
3	chr3:135222400-135223400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:135222600-135223200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:135222600-135223200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:135222600-135223200	Bivalent Enhancer	Fetal Lung	lung
7	chr3:135222600-135223400	Enhancers	Pancreas	Pancrea
8	chr3:135222600-135223400	Enhancers	Spleen	Spleen
9	chr3:135222800-135223200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:135222800-135223200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:135222800-135223200	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr3:135222800-135223200	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr3:135222800-135223400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr3:135222800-135223400	Enhancers	Fetal Brain Male	brain
15	chr3:135222800-135224200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr3:135223000-135223200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:135223000-135223200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:135223000-135223200	Active TSS	Brain Hippocampus Middle	brain
19	chr3:135223000-135223200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
20	chr3:135223000-135223200	Flanking Active TSS	Fetal Brain Female	brain
21	chr3:135223000-135223400	Enhancers	Brain Germinal Matrix	brain

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