Variant report
| Variant | rs56911514 |
|---|---|
| Chromosome Location | chr11:59511352-59511353 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254743 | Chromatin interaction |
| ENSG00000255538 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs11819937 | 1.00[AMR][1000 genomes] |
| rs11820418 | 1.00[AMR][1000 genomes] |
| rs11821828 | 1.00[AMR][1000 genomes] |
| rs11822263 | 1.00[AMR][1000 genomes] |
| rs11822304 | 1.00[AMR][1000 genomes] |
| rs11826341 | 1.00[AMR][1000 genomes] |
| rs12280000 | 1.00[AMR][1000 genomes] |
| rs17154275 | 1.00[AMR][1000 genomes] |
| rs60984215 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752406 | chr11:59490424-59529524 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
