Variant report
| Variant | rs60984215 |
|---|---|
| Chromosome Location | chr11:59509156-59509157 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:59507824..59511507-chr11:59512548..59517699,5 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-AP000790.1-6 | chr11:59508798-59509522 | NONHSAT021541 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000255538 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs11819937 | 1.00[AMR][1000 genomes] |
| rs11820418 | 1.00[AMR][1000 genomes] |
| rs11821828 | 1.00[AMR][1000 genomes] |
| rs11822263 | 1.00[AMR][1000 genomes] |
| rs11822304 | 1.00[AMR][1000 genomes] |
| rs11826341 | 1.00[AMR][1000 genomes] |
| rs12280000 | 1.00[AMR][1000 genomes] |
| rs17154275 | 1.00[AMR][1000 genomes] |
| rs56911514 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752406 | chr11:59490424-59529524 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
