Variant report

Variant	rs56937766
Chromosome Location	chr4:86526137-86526138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10021031	1.00[AMR][1000 genomes]
rs55856244	1.00[AMR][1000 genomes]
rs55856982	1.00[AMR][1000 genomes]
rs56131080	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56777230	1.00[AMR][1000 genomes]
rs57480554	1.00[AMR][1000 genomes]
rs58557354	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58758405	1.00[AMR][1000 genomes]
rs59039102	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59598716	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6850901	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72979954	1.00[AMR][1000 genomes]
rs72982052	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982057	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982061	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832882	1.00[AMR][1000 genomes]
rs73833364	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833367	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833368	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833374	1.00[AMR][1000 genomes]
rs73835209	1.00[AMR][1000 genomes]
rs73835210	1.00[AMR][1000 genomes]
rs73835228	1.00[AMR][1000 genomes]
rs73835229	1.00[AMR][1000 genomes]
rs73835233	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73835513	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86517800-86542200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:86523800-86526200	Enhancers	Primary B cells from peripheral blood	blood
3	chr4:86525400-86527200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:86525400-86527800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:86525400-86527800	Weak transcription	Stomach Mucosa	stomach
6	chr4:86525400-86528200	Weak transcription	GM12878-XiMat	blood
7	chr4:86525400-86530800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:86525600-86559200	Weak transcription	HSMM	muscle
9	chr4:86525800-86526200	Enhancers	Gastric	stomach
10	chr4:86525800-86527800	Weak transcription	Primary B cells from cord blood	blood
11	chr4:86526000-86536600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links