Variant report

Variant	rs56957964
Chromosome Location	chr3:151067207-151067208
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151052968..151055186-chr3:151065504..151067595,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12106781	0.94[AFR][1000 genomes]
rs1463726	0.89[AFR][1000 genomes]
rs16863319	0.91[AFR][1000 genomes]
rs16863330	0.81[AFR][1000 genomes]
rs16863331	0.81[AFR][1000 genomes]
rs56255408	0.81[AFR][1000 genomes]
rs58724507	0.89[AFR][1000 genomes]
rs60116140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61097635	0.89[AFR][1000 genomes]
rs61514162	0.86[AFR][1000 genomes]
rs73006560	0.94[AFR][1000 genomes]
rs73006586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73008503	0.92[AFR][1000 genomes]
rs73008504	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151063800-151099800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:151064200-151069000	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:151064200-151069800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:151064400-151067800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:151064400-151089200	Weak transcription	NHLF	lung
6	chr3:151064600-151068400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:151064600-151075200	Weak transcription	Adipose Nuclei	Adipose
8	chr3:151064600-151112400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:151065200-151069400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:151065400-151069000	Enhancers	Primary B cells from cord blood	blood
11	chr3:151065400-151079600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:151065600-151109400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:151065600-151115200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:151065800-151067600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:151065800-151067600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:151065800-151067800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:151065800-151082200	Weak transcription	Fetal Thymus	thymus
18	chr3:151066000-151067600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:151066000-151069000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:151066000-151074800	Weak transcription	Brain Anterior Caudate	brain
21	chr3:151066400-151075000	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:151066600-151069000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr3:151066800-151068000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr3:151066800-151069000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:151066800-151069200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr3:151066800-151074600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:151067000-151067800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr3:151067000-151067800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:151067000-151068000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr3:151067000-151068200	Enhancers	H1 Cell Line	embryonic stem cell
31	chr3:151067200-151067400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:151067200-151067600	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr3:151067200-151067800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:151067200-151068000	Enhancers	H9 Cell Line	embryonic stem cell
35	chr3:151067200-151069200	Enhancers	HUES48 Cell Line	embryonic stem cell

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