Variant report

Variant	rs16863330
Chromosome Location	chr3:151065043-151065044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151063727..151066442-chr3:151089515..151092440,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12106781	0.94[YRI][hapmap]
rs1388626	0.90[YRI][hapmap]
rs16846673	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs16863276	0.95[YRI][hapmap]
rs16863277	0.95[YRI][hapmap]
rs16863279	0.95[YRI][hapmap]
rs16863318	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs16863319	0.95[YRI][hapmap]
rs16863329	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16863331	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2046934	0.90[YRI][hapmap]
rs3821667	0.89[YRI][hapmap]
rs56255408	0.91[AFR][1000 genomes]
rs56957964	0.81[AFR][1000 genomes]
rs60116140	0.81[AFR][1000 genomes]
rs60196145	0.93[AFR][1000 genomes]
rs73006514	0.84[AFR][1000 genomes]
rs73006546	0.82[AFR][1000 genomes]
rs73006580	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006586	0.81[AFR][1000 genomes]
rs73006587	0.81[AFR][1000 genomes]
rs73006595	0.88[AFR][1000 genomes]
rs73008505	0.88[AFR][1000 genomes]
rs73008510	0.86[AFR][1000 genomes]
rs73869016	0.93[AFR][1000 genomes]
rs7632738	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151063200-151066000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr3:151063200-151067200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr3:151063800-151065800	Weak transcription	Brain Angular Gyrus	brain
4	chr3:151063800-151066800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:151063800-151099800	Weak transcription	Fetal Intestine Small	intestine
6	chr3:151064000-151065600	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:151064200-151065600	Weak transcription	Brain Anterior Caudate	brain
8	chr3:151064200-151069000	Enhancers	Primary hematopoietic stem cells	blood
9	chr3:151064200-151069800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:151064400-151065200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:151064400-151065400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:151064400-151065800	Enhancers	Fetal Thymus	thymus
13	chr3:151064400-151067800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:151064400-151089200	Weak transcription	NHLF	lung
15	chr3:151064600-151067200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:151064600-151068400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:151064600-151075200	Weak transcription	Adipose Nuclei	Adipose
18	chr3:151064600-151112400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:151064800-151065200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:151064800-151066000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr3:151065000-151065400	Flanking Active TSS	Primary B cells from cord blood	blood
22	chr3:151065000-151065600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr3:151065000-151065600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr3:151065000-151065800	Enhancers	H9 Cell Line	embryonic stem cell
25	chr3:151065000-151065800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr3:151065000-151065800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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