Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12106781	0.90[LWK][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes]
rs1388626	0.89[YRI][hapmap]
rs1463726	0.80[AFR][1000 genomes]
rs16846673	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs16863276	1.00[YRI][hapmap]
rs16863277	1.00[YRI][hapmap]
rs16863279	1.00[YRI][hapmap]
rs16863317	0.81[LWK][hapmap]
rs16863319	0.94[YRI][hapmap]
rs16863329	0.84[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs16863330	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs16863331	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2046934	0.89[YRI][hapmap]
rs3821667	0.89[YRI][hapmap]
rs56255408	0.93[AFR][1000 genomes]
rs58724507	0.80[AFR][1000 genomes]
rs60196145	0.95[AFR][1000 genomes]
rs61097635	0.80[AFR][1000 genomes]
rs73006514	0.95[AFR][1000 genomes]
rs73006546	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006560	0.80[AFR][1000 genomes]
rs73006580	0.91[AFR][1000 genomes]
rs73006595	0.95[AFR][1000 genomes]
rs73008505	0.90[AFR][1000 genomes]
rs73008510	0.88[AFR][1000 genomes]
rs73023031	1.00[AMR][1000 genomes]
rs73023047	0.81[AFR][1000 genomes]
rs73023066	0.85[AFR][1000 genomes]
rs73869016	0.95[AFR][1000 genomes]
rs7632738	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151045600-151056600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:151045600-151063600	Weak transcription	Brain Angular Gyrus	brain
3	chr3:151046800-151048200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:151046800-151049000	Weak transcription	Right Atrium	heart
5	chr3:151047000-151048200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:151047000-151055200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:151047400-151050200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr3:151047600-151049800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:151047800-151048400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:151047800-151049000	Active TSS	Primary hematopoietic stem cells	blood
11	chr3:151047800-151050000	Enhancers	Adipose Nuclei	Adipose
12	chr3:151048000-151048400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:151048000-151048400	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr3:151048000-151049200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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