Variant report

Variant	rs60196145
Chromosome Location	chr3:151063101-151063102
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12106781	0.80[AFR][1000 genomes]
rs1463726	0.80[AFR][1000 genomes]
rs16846673	0.95[AFR][1000 genomes]
rs16863318	0.95[AFR][1000 genomes]
rs16863329	0.95[AFR][1000 genomes]
rs16863330	0.93[AFR][1000 genomes]
rs16863331	0.93[AFR][1000 genomes]
rs56255408	0.93[AFR][1000 genomes]
rs58724507	0.80[AFR][1000 genomes]
rs61097635	0.80[AFR][1000 genomes]
rs73006514	0.90[AFR][1000 genomes]
rs73006546	0.88[AFR][1000 genomes]
rs73006560	0.80[AFR][1000 genomes]
rs73006580	0.95[AFR][1000 genomes]
rs73006595	0.95[AFR][1000 genomes]
rs73008505	0.90[AFR][1000 genomes]
rs73008510	0.88[AFR][1000 genomes]
rs73023047	0.81[AFR][1000 genomes]
rs73023066	0.85[AFR][1000 genomes]
rs73869016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151045600-151063600	Weak transcription	Brain Angular Gyrus	brain
2	chr3:151050000-151063600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:151057000-151063200	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:151058800-151063600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:151059200-151063400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:151059200-151063600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:151059200-151063800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:151059400-151064200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:151061800-151063200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr3:151062800-151063200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr3:151062800-151063600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:151063000-151063400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:151063000-151063400	Enhancers	Colon Smooth Muscle	Colon
14	chr3:151063000-151063400	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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