Variant report

Variant	rs16846673
Chromosome Location	chr3:151055645-151055646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151042759..151045096-chr3:151054558..151057198,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12106781	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1388626	0.89[YRI][hapmap]
rs1463726	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16863276	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16863277	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16863279	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16863300	1.00[MKK][hapmap]
rs16863307	1.00[AMR][1000 genomes]
rs16863317	0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs16863318	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs16863319	0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16863329	0.84[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs16863330	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs16863331	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs16863403	1.00[MEX][hapmap]
rs2046934	0.89[YRI][hapmap]
rs3821667	0.89[YRI][hapmap]
rs56255408	0.97[AFR][1000 genomes]
rs56654214	1.00[AMR][1000 genomes]
rs58724507	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59501054	1.00[AMR][1000 genomes]
rs60196145	0.95[AFR][1000 genomes]
rs60449267	1.00[AMR][1000 genomes]
rs61097635	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006514	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006546	0.88[AFR][1000 genomes]
rs73006560	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006580	0.90[AFR][1000 genomes]
rs73006595	1.00[AFR][1000 genomes]
rs73008505	0.95[AFR][1000 genomes]
rs73008510	0.92[AFR][1000 genomes]
rs73021193	1.00[AMR][1000 genomes]
rs73021198	1.00[AMR][1000 genomes]
rs73023004	1.00[AMR][1000 genomes]
rs73023014	1.00[AMR][1000 genomes]
rs73023047	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023066	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869016	0.95[AFR][1000 genomes]
rs73869165	1.00[AMR][1000 genomes]
rs7632688	1.00[AMR][1000 genomes]
rs7632738	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151045600-151056600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:151045600-151063600	Weak transcription	Brain Angular Gyrus	brain
3	chr3:151049600-151057800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:151050000-151063600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:151051200-151057800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:151055400-151056200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr3:151055400-151056200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:151055400-151057000	Active TSS	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links