Variant report

Variant	rs16863319
Chromosome Location	chr3:151049864-151049865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr3:151049472-151049880	HL-60	blood:	n/a	n/a
2	GATA3	chr3:151049544-151049927	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
P2RY13	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12106781	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1388626	0.85[YRI][hapmap]
rs1463726	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846673	0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16863276	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs16863277	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs16863279	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs16863307	1.00[AMR][1000 genomes]
rs16863317	1.00[AMR][1000 genomes]
rs16863318	0.94[YRI][hapmap]
rs16863320	0.81[AFR][1000 genomes]
rs16863329	0.94[YRI][hapmap]
rs16863330	0.95[YRI][hapmap]
rs16863331	0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs2046934	0.85[YRI][hapmap]
rs3821667	0.83[YRI][hapmap]
rs56255408	0.80[AFR][1000 genomes]
rs56654214	1.00[AMR][1000 genomes]
rs56957964	0.91[AFR][1000 genomes]
rs58724507	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59501054	1.00[AMR][1000 genomes]
rs60116140	0.91[AFR][1000 genomes]
rs60449267	1.00[AMR][1000 genomes]
rs61097635	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61514162	0.82[AFR][1000 genomes]
rs73006514	1.00[AMR][1000 genomes]
rs73006560	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006586	0.91[AFR][1000 genomes]
rs73006587	0.91[AFR][1000 genomes]
rs73006595	0.83[AFR][1000 genomes]
rs73008503	0.91[AFR][1000 genomes]
rs73008504	0.88[AFR][1000 genomes]
rs73021193	1.00[AMR][1000 genomes]
rs73021198	1.00[AMR][1000 genomes]
rs73023004	1.00[AMR][1000 genomes]
rs73023014	1.00[AMR][1000 genomes]
rs73023047	1.00[AMR][1000 genomes]
rs73023066	1.00[AMR][1000 genomes]
rs73869165	1.00[AMR][1000 genomes]
rs7632688	1.00[AMR][1000 genomes]
rs7632738	0.90[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151045600-151056600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:151045600-151063600	Weak transcription	Brain Angular Gyrus	brain
3	chr3:151047000-151055200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:151047400-151050200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr3:151047800-151050000	Enhancers	Adipose Nuclei	Adipose
6	chr3:151048200-151050000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:151048400-151051200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:151049000-151050400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:151049000-151051200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:151049200-151050200	Enhancers	Primary B cells from cord blood	blood
11	chr3:151049200-151051200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:151049600-151050000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr3:151049600-151057800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:151049800-151050600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links