Variant report

Variant	rs73021198
Chromosome Location	chr3:150958470-150958471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12106781	1.00[AMR][1000 genomes]
rs1463726	1.00[AMR][1000 genomes]
rs16846673	1.00[AMR][1000 genomes]
rs16863276	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16863277	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16863279	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16863307	1.00[AMR][1000 genomes]
rs16863317	1.00[AMR][1000 genomes]
rs16863319	1.00[AMR][1000 genomes]
rs56654214	1.00[AMR][1000 genomes]
rs58724507	1.00[AMR][1000 genomes]
rs59501054	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60449267	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61097635	1.00[AMR][1000 genomes]
rs73006514	1.00[AMR][1000 genomes]
rs73006560	1.00[AMR][1000 genomes]
rs73021193	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023004	1.00[AMR][1000 genomes]
rs73023014	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023047	1.00[AMR][1000 genomes]
rs73023066	1.00[AMR][1000 genomes]
rs73869165	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7632688	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7632738	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150946200-150979400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150946800-150969200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:150946800-150983600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:150949200-150959200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:150950000-150966400	Weak transcription	Primary B cells from cord blood	blood
6	chr3:150952800-150978400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr3:150953000-150959000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:150953600-150959000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:150953800-150983800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:150954600-150958800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:150956000-150962200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:150957800-150959600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:150958000-150966800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:150958200-150959400	Enhancers	Colon Smooth Muscle	Colon
15	chr3:150958400-150959000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:150958400-150959600	Strong transcription	Primary hematopoietic stem cells	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links