Variant report

Variant	rs73023047
Chromosome Location	chr3:150997049-150997050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12106781	1.00[AMR][1000 genomes]
rs1463726	1.00[AMR][1000 genomes]
rs16846673	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16863276	1.00[AMR][1000 genomes]
rs16863277	1.00[AMR][1000 genomes]
rs16863279	1.00[AMR][1000 genomes]
rs16863307	1.00[AMR][1000 genomes]
rs16863317	1.00[AMR][1000 genomes]
rs16863318	0.81[AFR][1000 genomes]
rs16863319	1.00[AMR][1000 genomes]
rs16863331	0.88[AFR][1000 genomes]
rs56255408	0.88[AFR][1000 genomes]
rs56654214	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58724507	1.00[AMR][1000 genomes]
rs59501054	1.00[AMR][1000 genomes]
rs60196145	0.81[AFR][1000 genomes]
rs60449267	1.00[AMR][1000 genomes]
rs61097635	1.00[AMR][1000 genomes]
rs73006514	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006560	1.00[AMR][1000 genomes]
rs73006595	0.85[AFR][1000 genomes]
rs73008505	0.85[AFR][1000 genomes]
rs73008510	0.83[AFR][1000 genomes]
rs73021193	1.00[AMR][1000 genomes]
rs73021198	1.00[AMR][1000 genomes]
rs73023004	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023014	1.00[AMR][1000 genomes]
rs73023031	0.85[AFR][1000 genomes]
rs73023066	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869016	0.81[AFR][1000 genomes]
rs73869165	1.00[AMR][1000 genomes]
rs7632688	1.00[AMR][1000 genomes]
rs7632738	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150977800-151000000	Weak transcription	Placenta	Placenta
2	chr3:150983000-151011000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:150983800-151000600	Weak transcription	Brain Substantia Nigra	brain
4	chr3:150984200-150998800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:150984600-151003600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:150984600-151003600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:150991400-150998600	Enhancers	Primary T cells from cord blood	blood
9	chr3:150991800-150998800	Enhancers	Primary hematopoietic stem cells	blood
10	chr3:150992000-150997400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:150994400-150997200	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr3:150994400-150998200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:150994600-150999600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:150994600-151003600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:150995600-150997400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr3:150995600-150998400	Enhancers	Fetal Thymus	thymus
17	chr3:150996200-150997200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:150996200-150998600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr3:150996200-151000200	Weak transcription	Brain Anterior Caudate	brain
20	chr3:150996200-151001000	Weak transcription	Stomach Mucosa	stomach
21	chr3:150996400-150997200	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr3:150996400-150997600	Enhancers	Fetal Stomach	stomach
23	chr3:150996400-150997800	Enhancers	Rectal Smooth Muscle	rectum
24	chr3:150996400-150998800	Enhancers	Primary B cells from peripheral blood	blood
25	chr3:150996600-150997200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:150996600-150997200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:150996600-150997200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:150996600-150998800	Enhancers	Colon Smooth Muscle	Colon
29	chr3:150996600-150999800	Weak transcription	NHDF-Ad	bronchial
30	chr3:150996600-151000600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:150996800-150997200	Enhancers	Fetal Lung	lung
32	chr3:150996800-150997400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr3:150996800-150997600	Enhancers	Duodenum Mucosa	Duodenum
34	chr3:150996800-150998000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:150996800-150999000	Enhancers	Primary B cells from cord blood	blood
36	chr3:150997000-150998400	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr3:150997000-151001000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:150997000-151001000	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr3:150997000-151001000	Weak transcription	Dnd41	blood

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