Variant report

Variant	rs16863317
Chromosome Location	chr3:151044459-151044460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:151029737..151031573-chr3:151044175..151046393,2	MCF-7	breast:
2	chr3:151021234..151025100-chr3:151041293..151045950,7	MCF-7	breast:
3	chr3:151042759..151045096-chr3:151054558..151057198,3	K562	blood:
4	chr3:151032337..151036170-chr3:151042057..151045470,4	MCF-7	breast:
5	chr3:151033641..151035853-chr3:151044142..151046293,2	MCF-7	breast:
6	chr3:151021027..151023183-chr3:151044316..151046639,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138271	Chromatin interaction
ENSG00000144893	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12106781	0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs1463726	1.00[AMR][1000 genomes]
rs16846673	0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs16863276	1.00[AMR][1000 genomes]
rs16863277	1.00[AMR][1000 genomes]
rs16863279	1.00[AMR][1000 genomes]
rs16863300	1.00[MKK][hapmap]
rs16863307	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16863318	0.81[LWK][hapmap]
rs16863319	1.00[AMR][1000 genomes]
rs16863329	0.81[LWK][hapmap]
rs16863403	1.00[MEX][hapmap]
rs56654214	1.00[AMR][1000 genomes]
rs58724507	1.00[AMR][1000 genomes]
rs59501054	1.00[AMR][1000 genomes]
rs60449267	1.00[AMR][1000 genomes]
rs61097635	1.00[AMR][1000 genomes]
rs73006514	1.00[AMR][1000 genomes]
rs73006560	1.00[AMR][1000 genomes]
rs73021193	1.00[AMR][1000 genomes]
rs73021198	1.00[AMR][1000 genomes]
rs73023004	1.00[AMR][1000 genomes]
rs73023014	1.00[AMR][1000 genomes]
rs73023047	1.00[AMR][1000 genomes]
rs73023066	1.00[AMR][1000 genomes]
rs73869165	1.00[AMR][1000 genomes]
rs7632688	1.00[AMR][1000 genomes]
rs7632738	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151036000-151044600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:151036600-151045200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:151038800-151046400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:151039000-151045200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:151039000-151045200	Weak transcription	NHEK	skin
6	chr3:151039000-151045200	Weak transcription	NHLF	lung
7	chr3:151039200-151045200	Weak transcription	Hela-S3	cervix
8	chr3:151039800-151045200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:151041800-151045000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:151042400-151045000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:151042400-151045200	Weak transcription	HMEC	breast
12	chr3:151042600-151046200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:151043000-151044600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr3:151044000-151044600	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr3:151044000-151045200	Active TSS	Primary hematopoietic stem cells	blood
16	chr3:151044200-151044600	Enhancers	Duodenum Mucosa	Duodenum
17	chr3:151044200-151045400	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
18	chr3:151044400-151045000	Enhancers	Adipose Nuclei	Adipose
19	chr3:151044400-151045200	Active TSS	Liver	Liver
20	chr3:151044400-151045600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr3:151044400-151047000	Active TSS	Brain Hippocampus Middle	brain

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