Variant report

Variant	rs73006580
Chromosome Location	chr3:151063621-151063622
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr3:151063569-151064181	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151039875..151042217-chr3:151061873..151064664,2	MCF-7	breast:

Variant related genes	Relation type
P2RY12	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16846673	0.90[AFR][1000 genomes]
rs16863318	0.91[AFR][1000 genomes]
rs16863329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16863330	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16863331	0.88[AFR][1000 genomes]
rs56255408	0.88[AFR][1000 genomes]
rs60196145	0.95[AFR][1000 genomes]
rs73006514	0.86[AFR][1000 genomes]
rs73006546	0.84[AFR][1000 genomes]
rs73006595	0.90[AFR][1000 genomes]
rs73008505	0.86[AFR][1000 genomes]
rs73008510	0.84[AFR][1000 genomes]
rs73023066	0.81[AFR][1000 genomes]
rs73869016	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151059200-151063800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:151059400-151064200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:151063200-151066000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr3:151063200-151067200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr3:151063400-151064000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:151063400-151064000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:151063600-151063800	Active TSS	Primary hematopoietic stem cells	blood
8	chr3:151063600-151063800	Active TSS	Muscle Satellite Cultured Cells	--
9	chr3:151063600-151063800	Enhancers	Brain Angular Gyrus	brain
10	chr3:151063600-151063800	Enhancers	Fetal Intestine Small	intestine
11	chr3:151063600-151064000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:151063600-151064000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:151063600-151064000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:151063600-151064000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:151063600-151064000	Active TSS	Adipose Nuclei	Adipose
16	chr3:151063600-151064000	Active TSS	Aorta	Aorta
17	chr3:151063600-151064000	Active TSS	Brain Hippocampus Middle	brain
18	chr3:151063600-151064000	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr3:151063600-151064000	Active TSS	Rectal Smooth Muscle	rectum
20	chr3:151063600-151064000	Active TSS	Stomach Smooth Muscle	stomach
21	chr3:151063600-151064000	Active TSS	NHDF-Ad	bronchial
22	chr3:151063600-151064200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
23	chr3:151063600-151064200	Active TSS	Brain Anterior Caudate	brain
24	chr3:151063600-151064200	Active TSS	Colon Smooth Muscle	Colon
25	chr3:151063600-151064200	Active TSS	Right Atrium	heart
26	chr3:151063600-151064400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:151063600-151064400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:151063600-151064400	Active TSS	Fetal Lung	lung
29	chr3:151063600-151064400	Enhancers	NHLF	lung
30	chr3:151063600-151064600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr3:151063600-151064600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:151063600-151065000	Active TSS	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links