Variant report

Variant	rs56989200
Chromosome Location	chr1:224944592-224944593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1347555	1.00[AFR][1000 genomes]
rs56763434	0.95[AFR][1000 genomes]
rs56810668	1.00[AFR][1000 genomes]
rs58238044	1.00[AFR][1000 genomes]
rs58864034	1.00[AFR][1000 genomes]
rs73125864	1.00[AFR][1000 genomes]
rs73125866	1.00[AFR][1000 genomes]
rs73125878	1.00[AFR][1000 genomes]
rs73125880	0.89[AFR][1000 genomes]
rs73125887	0.95[AFR][1000 genomes]
rs73125891	1.00[AFR][1000 genomes]
rs73125894	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224935800-224946200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:224943600-224946000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links