Variant report

Variant	rs73125880
Chromosome Location	chr1:224949010-224949011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1347555	0.89[AFR][1000 genomes]
rs56763434	0.84[AFR][1000 genomes]
rs56810668	0.89[AFR][1000 genomes]
rs56989200	0.89[AFR][1000 genomes]
rs58238044	0.89[AFR][1000 genomes]
rs58864034	0.89[AFR][1000 genomes]
rs73125864	0.89[AFR][1000 genomes]
rs73125866	0.89[AFR][1000 genomes]
rs73125878	0.89[AFR][1000 genomes]
rs73125887	0.84[AFR][1000 genomes]
rs73125891	0.89[AFR][1000 genomes]
rs73125894	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224944800-224954800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:224947200-224950400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:224947200-224951400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:224948000-224956800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:224948400-224949200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:224948400-224949800	Enhancers	Liver	Liver
7	chr1:224948600-224949600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links