Variant report

Variant	rs56763434
Chromosome Location	chr1:224948285-224948286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1347555	0.95[AFR][1000 genomes]
rs1811405	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56810668	0.95[AFR][1000 genomes]
rs56989200	0.95[AFR][1000 genomes]
rs58238044	0.95[AFR][1000 genomes]
rs58864034	0.95[AFR][1000 genomes]
rs61742590	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73125864	0.95[AFR][1000 genomes]
rs73125866	0.95[AFR][1000 genomes]
rs73125878	0.95[AFR][1000 genomes]
rs73125880	0.84[AFR][1000 genomes]
rs73125887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73125891	0.95[AFR][1000 genomes]
rs73125894	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56763434	TMEM14C	trans	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224944800-224954800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:224946800-224948800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:224947200-224950400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:224947200-224951400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:224947400-224948400	Enhancers	Stomach Smooth Muscle	stomach
6	chr1:224947400-224948600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:224948000-224956800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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