Variant report

Variant	rs56989374
Chromosome Location	chr14:56572475-56572476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs59075846	1.00[AMR][1000 genomes]
rs59167716	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573076	1.00[AMR][1000 genomes]
rs6573077	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573078	1.00[AMR][1000 genomes]
rs7143060	1.00[AMR][1000 genomes]
rs7143280	1.00[AMR][1000 genomes]
rs7143949	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56571000-56572800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr14:56571200-56572800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:56572000-56573600	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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