Variant report

Variant	rs6573076
Chromosome Location	chr14:56544518-56544519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11158069	1.00[EUR][1000 genomes]
rs1382975	1.00[EUR][1000 genomes]
rs17093193	1.00[MEX][hapmap]
rs56989374	1.00[AMR][1000 genomes]
rs59075846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59167716	1.00[AMR][1000 genomes]
rs60661539	1.00[EUR][1000 genomes]
rs6573077	1.00[AMR][1000 genomes]
rs6573078	1.00[AMR][1000 genomes]
rs7143060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7143280	1.00[AMR][1000 genomes]
rs7143949	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7145404	1.00[EUR][1000 genomes]
rs7153228	1.00[EUR][1000 genomes]
rs8016445	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56541000-56554200	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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