Variant report

Variant	rs60661539
Chromosome Location	chr14:56435099-56435100
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11158069	1.00[EUR][1000 genomes]
rs59075846	1.00[EUR][1000 genomes]
rs6573076	1.00[EUR][1000 genomes]
rs7143060	1.00[EUR][1000 genomes]
rs7143949	1.00[EUR][1000 genomes]
rs7145404	1.00[EUR][1000 genomes]
rs7153228	1.00[EUR][1000 genomes]
rs74051596	1.00[ASN][1000 genomes]
rs74051597	1.00[ASN][1000 genomes]
rs74051598	1.00[ASN][1000 genomes]
rs74051599	1.00[ASN][1000 genomes]
rs74051600	1.00[ASN][1000 genomes]
rs74051601	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56425000-56435600	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:56431000-56438800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:56431200-56440800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:56432800-56440000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:56433800-56435400	Weak transcription	Fetal Lung	lung
6	chr14:56433800-56435600	Weak transcription	Fetal Brain Female	brain
7	chr14:56434800-56435800	Enhancers	Left Ventricle	heart
8	chr14:56435000-56435800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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