Variant report

Variant	rs7145404
Chromosome Location	chr14:56472820-56472821
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11158069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59075846	1.00[EUR][1000 genomes]
rs60661539	1.00[EUR][1000 genomes]
rs6573076	1.00[EUR][1000 genomes]
rs7143060	1.00[EUR][1000 genomes]
rs7143949	1.00[EUR][1000 genomes]
rs7153228	1.00[EUR][1000 genomes]
rs7159748	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56468200-56473000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:56469600-56473200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:56470400-56473000	Enhancers	Fetal Muscle Leg	muscle
4	chr14:56470400-56473000	Enhancers	Stomach Mucosa	stomach
5	chr14:56470800-56473000	Enhancers	Dnd41	blood
6	chr14:56470800-56473200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr14:56471000-56473000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr14:56471000-56473000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr14:56471000-56473200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr14:56471200-56473000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr14:56471600-56473000	Enhancers	Fetal Muscle Trunk	muscle
12	chr14:56471600-56473000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr14:56472000-56473200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:56472200-56473000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:56472200-56473000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr14:56472200-56473200	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr14:56472200-56474200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr14:56472400-56473000	Enhancers	Fetal Brain Female	brain
19	chr14:56472400-56473000	Enhancers	Right Atrium	heart
20	chr14:56472400-56473200	Enhancers	Adipose Nuclei	Adipose
21	chr14:56472400-56473200	Enhancers	NHDF-Ad	bronchial
22	chr14:56472400-56474400	Weak transcription	Primary B cells from cord blood	blood
23	chr14:56472600-56473000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:56472600-56473000	Weak transcription	GM12878-XiMat	blood
25	chr14:56472600-56473000	Enhancers	Osteobl	bone
26	chr14:56472600-56473200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:56472600-56473400	Enhancers	Fetal Intestine Large	intestine
28	chr14:56472600-56473400	Enhancers	Fetal Intestine Small	intestine
29	chr14:56472800-56473200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr14:56472800-56473200	Enhancers	Ovary	ovary
31	chr14:56472800-56473200	Enhancers	NH-A	brain
32	chr14:56472800-56474000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr14:56472800-56474400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:56472800-56474400	Weak transcription	Monocytes-CD14+_RO01746	blood

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