Variant report

Variant	rs7143949
Chromosome Location	chr14:56542385-56542386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11158069	1.00[EUR][1000 genomes]
rs1382975	1.00[EUR][1000 genomes]
rs56989374	0.83[AMR][1000 genomes]
rs59075846	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59167716	0.83[AMR][1000 genomes]
rs60661539	1.00[EUR][1000 genomes]
rs6573076	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573077	0.83[AMR][1000 genomes]
rs6573078	0.83[AMR][1000 genomes]
rs7143060	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7143280	0.83[AMR][1000 genomes]
rs7145404	1.00[EUR][1000 genomes]
rs7153228	1.00[EUR][1000 genomes]
rs8021316	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56541000-56554200	Weak transcription	Gastric	stomach
2	chr14:56541200-56542400	Weak transcription	Fetal Lung	lung
3	chr14:56542200-56542400	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr14:56542200-56542800	Enhancers	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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