Variant report

Variant	rs57000190
Chromosome Location	chr4:107292514-107292515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs57146559	0.83[ASN][1000 genomes]
rs62318079	0.89[AMR][1000 genomes]
rs62318080	0.95[AMR][1000 genomes]
rs62318082	0.95[AMR][1000 genomes]
rs62318085	0.89[AMR][1000 genomes]
rs62318087	0.95[AMR][1000 genomes]
rs62318088	0.95[AMR][1000 genomes]
rs62318089	0.90[AMR][1000 genomes]
rs62318090	0.90[AMR][1000 genomes]
rs62318091	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62318092	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62318093	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62318116	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62318118	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62318124	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62318125	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72660519	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72660521	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72660524	0.89[AMR][1000 genomes]
rs72660532	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107291200-107292600	Enhancers	NHDF-Ad	bronchial
2	chr4:107292400-107292600	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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