Variant report

Variant	rs62318125
Chromosome Location	chr4:107285061-107285062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs57000190	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62318075	0.84[EUR][1000 genomes]
rs62318079	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62318080	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62318082	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62318085	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62318087	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62318088	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62318089	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62318090	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62318091	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62318092	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62318093	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62318116	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62318118	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62318123	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62318124	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62321377	0.84[EUR][1000 genomes]
rs62321378	0.84[EUR][1000 genomes]
rs62321380	0.82[EUR][1000 genomes]
rs72660519	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72660521	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72660524	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72660532	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72677343	0.81[EUR][1000 genomes]
rs72677353	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107260800-107285400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:107270600-107286200	Weak transcription	HepG2	liver
3	chr4:107270800-107290600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:107271200-107286400	Weak transcription	Fetal Intestine Large	intestine
5	chr4:107273000-107286600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:107273000-107286600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:107280400-107286400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr4:107280800-107285400	Weak transcription	HSMM	muscle
9	chr4:107280800-107285400	Weak transcription	NHLF	lung
10	chr4:107280800-107285400	Weak transcription	Osteobl	bone
11	chr4:107280800-107285600	Weak transcription	HSMMtube	muscle
12	chr4:107280800-107286200	Weak transcription	NH-A	brain
13	chr4:107281000-107285200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:107281000-107286200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:107281200-107285400	Weak transcription	NHDF-Ad	bronchial
16	chr4:107283800-107285400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:107283800-107286600	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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