Variant report

Variant	rs62318087
Chromosome Location	chr4:107193469-107193470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10489129	0.84[EUR][1000 genomes]
rs11942385	0.84[EUR][1000 genomes]
rs17036506	0.84[EUR][1000 genomes]
rs17036511	0.84[EUR][1000 genomes]
rs17036530	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17036535	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4264831	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4472215	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4552462	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs57000190	0.95[AMR][1000 genomes]
rs62318075	0.97[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs62318079	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62318080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62318082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62318085	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62318088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62318089	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62318090	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62318091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62318092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62318093	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62318116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62318118	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62318123	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62318124	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62318125	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62320112	0.84[EUR][1000 genomes]
rs62320113	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62320115	0.84[EUR][1000 genomes]
rs62320116	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62320117	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62320120	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62320124	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62320128	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62320129	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62321362	0.88[AFR][1000 genomes]
rs62321363	0.84[EUR][1000 genomes]
rs62321364	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62321366	0.86[EUR][1000 genomes]
rs62321372	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62321373	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62321374	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62321375	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62321376	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62321377	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs62321378	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs62321380	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62321382	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs67566720	0.84[EUR][1000 genomes]
rs72660519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72660521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72660524	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72660532	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72675692	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72675702	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72677343	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72677353	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879705	chr4:107179126-107212966	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:107116800-107193800	Weak transcription	Small Intestine	intestine
3	chr4:107141600-107214800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:107142400-107195800	Weak transcription	Psoas Muscle	Psoas
5	chr4:107155600-107236000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:107157200-107203000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:107170800-107208200	Weak transcription	Fetal Kidney	kidney
8	chr4:107172200-107194800	Weak transcription	Fetal Lung	lung
9	chr4:107177400-107207600	Weak transcription	Fetal Brain Female	brain
10	chr4:107177600-107202600	Weak transcription	Primary T cells from cord blood	blood
11	chr4:107177600-107205600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:107177800-107196000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:107177800-107207600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:107177800-107207600	Weak transcription	Adipose Nuclei	Adipose
15	chr4:107177800-107211600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:107177800-107215200	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:107178000-107194600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:107178000-107194600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:107178000-107194800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:107178000-107195800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:107178000-107199400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:107178000-107205400	Weak transcription	Thymus	Thymus
23	chr4:107178000-107207800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr4:107178000-107207800	Weak transcription	Lung	lung
25	chr4:107178000-107207800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:107178000-107208200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr4:107178000-107208400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr4:107178000-107211800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:107178000-107211800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr4:107178000-107211800	Weak transcription	Fetal Muscle Leg	muscle
31	chr4:107178000-107211800	Weak transcription	Fetal Stomach	stomach
32	chr4:107178000-107211800	Weak transcription	Left Ventricle	heart
33	chr4:107178000-107211800	Weak transcription	Ovary	ovary
34	chr4:107178000-107236200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr4:107178000-107236200	Weak transcription	Right Ventricle	heart
36	chr4:107178000-107236600	Weak transcription	Esophagus	oesophagus
37	chr4:107178000-107236600	Weak transcription	Pancreas	Pancrea
38	chr4:107178200-107211600	Weak transcription	Placenta	Placenta
39	chr4:107178200-107236000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr4:107178400-107194600	Weak transcription	GM12878-XiMat	blood
41	chr4:107178400-107198800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr4:107179000-107211400	Weak transcription	Primary B cells from peripheral blood	blood
43	chr4:107179800-107208600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr4:107180000-107194800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr4:107180200-107195000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr4:107180600-107207000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr4:107180600-107207400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr4:107181000-107194800	Weak transcription	Primary B cells from cord blood	blood
49	chr4:107181400-107195400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:107182800-107202600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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