Variant report

Variant	rs62321362
Chromosome Location	chr4:107007768-107007769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107000720..107002870-chr4:107005901..107008806,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10489129	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11942385	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17036506	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17036511	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17036530	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17036535	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4264831	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4472215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4552462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62318075	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62318080	0.88[AFR][1000 genomes]
rs62318082	0.88[AFR][1000 genomes]
rs62318087	0.88[AFR][1000 genomes]
rs62318088	0.88[AFR][1000 genomes]
rs62318090	0.88[AFR][1000 genomes]
rs62318091	0.88[AFR][1000 genomes]
rs62318092	0.88[AFR][1000 genomes]
rs62318116	0.88[AFR][1000 genomes]
rs62320069	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62320070	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62320112	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62320113	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62320115	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62320116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62320117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62320120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62320124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62320128	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62320129	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62321363	0.94[AMR][1000 genomes]
rs62321364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62321366	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs62321372	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62321373	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62321374	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62321375	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62321376	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62321377	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62321378	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62321380	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62321382	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs67566720	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72660519	0.88[AFR][1000 genomes]
rs72660521	0.88[AFR][1000 genomes]
rs72660532	0.85[AFR][1000 genomes]
rs72675686	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72675692	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72675702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72677343	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs72677353	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414280	chr4:106987397-107017178	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3419151	chr4:106987397-107020894	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106984000-107010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:106985000-107011400	Weak transcription	HepG2	liver
3	chr4:106993000-107008800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:106993200-107010000	Weak transcription	Left Ventricle	heart
5	chr4:106993400-107010400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:106993600-107010000	Weak transcription	Right Ventricle	heart
7	chr4:106993800-107010800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:106994600-107015000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:106994800-107011600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:106995200-107010000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:106995200-107011400	Weak transcription	Colonic Mucosa	Colon
12	chr4:106995400-107011000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:106995400-107011000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:106995600-107010400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:106996000-107010800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:106997200-107031000	Weak transcription	Psoas Muscle	Psoas
17	chr4:106998000-107010000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:106998600-107010200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:106998600-107010600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr4:106998600-107010800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:106999000-107011000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:106999000-107011800	Weak transcription	Fetal Heart	heart
23	chr4:106999000-107012000	Weak transcription	NHDF-Ad	bronchial
24	chr4:106999200-107010000	Weak transcription	Fetal Brain Male	brain
25	chr4:106999200-107010400	Weak transcription	HSMM	muscle
26	chr4:107000000-107011400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:107000200-107010000	Weak transcription	Brain Angular Gyrus	brain
28	chr4:107001000-107010200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:107001200-107018600	Weak transcription	HUVEC	blood vessel
30	chr4:107001600-107010200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:107001600-107010200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr4:107002600-107008600	Weak transcription	Primary B cells from cord blood	blood
33	chr4:107002800-107009600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr4:107002800-107010000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:107002800-107010000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:107002800-107010000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr4:107002800-107011400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr4:107003000-107010000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr4:107003000-107010400	Weak transcription	Brain Substantia Nigra	brain
40	chr4:107003200-107008400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr4:107003200-107010200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr4:107003400-107007800	Weak transcription	Small Intestine	intestine
43	chr4:107003400-107008400	Weak transcription	Fetal Kidney	kidney
44	chr4:107003600-107010800	Weak transcription	Colon Smooth Muscle	Colon
45	chr4:107003800-107008400	Weak transcription	Brain Hippocampus Middle	brain
46	chr4:107003800-107010600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr4:107004200-107009800	Weak transcription	Liver	Liver
48	chr4:107004200-107010000	Weak transcription	Pancreas	Pancrea
49	chr4:107004200-107011000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr4:107004600-107009800	Weak transcription	Lung	lung

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