Variant report

Variant	rs62321366
Chromosome Location	chr4:107013845-107013846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10489129	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11942385	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17036506	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17036511	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17036530	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17036535	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4264831	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4472215	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4552462	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62318075	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62318079	0.91[EUR][1000 genomes]
rs62318080	0.84[EUR][1000 genomes]
rs62318082	0.84[EUR][1000 genomes]
rs62318085	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62318087	0.86[EUR][1000 genomes]
rs62318088	0.86[EUR][1000 genomes]
rs62318089	0.84[EUR][1000 genomes]
rs62318090	0.82[EUR][1000 genomes]
rs62320069	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62320070	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62320112	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62320113	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62320115	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62320116	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62320117	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62320120	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62320124	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62320128	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62320129	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321362	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs62321363	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62321364	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321372	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321373	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62321374	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321375	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321376	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321377	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62321378	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62321380	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62321382	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67566720	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72660524	0.85[EUR][1000 genomes]
rs72675686	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72675692	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72675702	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72677343	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72677353	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414280	chr4:106987397-107017178	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3419151	chr4:106987397-107020894	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106994600-107015000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:106997200-107031000	Weak transcription	Psoas Muscle	Psoas
3	chr4:107001200-107018600	Weak transcription	HUVEC	blood vessel
4	chr4:107009600-107014800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr4:107009800-107014200	ZNF genes & repeats	Lung	lung
6	chr4:107010000-107014200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:107010000-107014200	ZNF genes & repeats	Esophagus	oesophagus
8	chr4:107010000-107014400	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr4:107010000-107014600	ZNF genes & repeats	Fetal Stomach	stomach
10	chr4:107010200-107014200	ZNF genes & repeats	Placenta	Placenta
11	chr4:107010200-107025400	Weak transcription	Small Intestine	intestine
12	chr4:107010800-107014000	Strong transcription	Brain Germinal Matrix	brain
13	chr4:107010800-107014000	Strong transcription	Placenta Amnion	Placenta Amnion
14	chr4:107010800-107014200	ZNF genes & repeats	Gastric	stomach
15	chr4:107010800-107014200	ZNF genes & repeats	Spleen	Spleen
16	chr4:107011000-107014800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:107011400-107014200	ZNF genes & repeats	Fetal Intestine Large	intestine
18	chr4:107012000-107014000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
19	chr4:107012200-107014000	Strong transcription	Stomach Smooth Muscle	stomach
20	chr4:107012400-107014200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:107012400-107024400	Weak transcription	Fetal Heart	heart
22	chr4:107012400-107026800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr4:107012600-107014000	Weak transcription	Primary T cells from cord blood	blood
24	chr4:107012600-107014000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr4:107012600-107014000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr4:107012600-107014000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr4:107012600-107014000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr4:107012600-107014400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:107012600-107014600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr4:107012600-107016200	Weak transcription	HepG2	liver
31	chr4:107012600-107017600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:107012600-107017600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr4:107012600-107017800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr4:107012600-107025000	Weak transcription	Brain Substantia Nigra	brain
35	chr4:107012600-107025200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:107012600-107026200	Weak transcription	Stomach Mucosa	stomach
37	chr4:107012600-107026600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr4:107012600-107026600	Weak transcription	GM12878-XiMat	blood
39	chr4:107012600-107026600	Weak transcription	HSMM	muscle
40	chr4:107012600-107026800	Weak transcription	Fetal Kidney	kidney
41	chr4:107012600-107029800	Weak transcription	Fetal Brain Male	brain
42	chr4:107012600-107029800	Weak transcription	Dnd41	blood
43	chr4:107012600-107031200	Weak transcription	Brain Angular Gyrus	brain
44	chr4:107012600-107033200	Weak transcription	Osteobl	bone
45	chr4:107012600-107033800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr4:107012600-107034400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr4:107012600-107038400	Weak transcription	NHDF-Ad	bronchial
48	chr4:107012800-107014000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:107012800-107014600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr4:107012800-107014600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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