Variant report

Variant	rs4552462
Chromosome Location	chr4:106993606-106993607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10489129	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11942385	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036506	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036511	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036530	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036535	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4264831	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4472215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62318075	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62318079	0.84[EUR][1000 genomes]
rs62318080	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62318082	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62318085	0.84[EUR][1000 genomes]
rs62318087	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62318088	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62318089	0.88[EUR][1000 genomes]
rs62318090	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62318091	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62318092	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62318093	0.84[EUR][1000 genomes]
rs62320069	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320070	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320112	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320113	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320115	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320128	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320129	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62321362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62321363	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62321364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62321366	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321372	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321373	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321374	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321375	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321376	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321377	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321378	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321380	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62321382	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67566720	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6853347	0.84[EUR][1000 genomes]
rs72660519	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72660521	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72675686	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72675692	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72675702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72677343	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72677353	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414280	chr4:106987397-107017178	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3419151	chr4:106987397-107020894	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106967800-106994600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106972400-106997000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:106983800-106994800	Weak transcription	Fetal Kidney	kidney
4	chr4:106983800-106995000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:106984000-106995000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:106984000-107010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:106984600-106998200	Weak transcription	Fetal Heart	heart
8	chr4:106985000-107011400	Weak transcription	HepG2	liver
9	chr4:106986800-107002400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:106987000-106995800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:106988000-106994800	Weak transcription	Aorta	Aorta
12	chr4:106990000-106998000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:106992400-106998000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr4:106992600-106994800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:106993000-107008800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:106993200-106997000	Weak transcription	Gastric	stomach
17	chr4:106993200-106997200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:106993200-106997800	Weak transcription	Brain Hippocampus Middle	brain
19	chr4:106993200-107010000	Weak transcription	Left Ventricle	heart
20	chr4:106993400-106998200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:106993400-107010400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:106993600-106994000	ZNF genes & repeats	Liver	Liver
23	chr4:106993600-106998200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr4:106993600-106998400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr4:106993600-107002400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:106993600-107010000	Weak transcription	Right Ventricle	heart

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