Variant report

Variant	rs62321364
Chromosome Location	chr4:107011157-107011158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10489129	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11942385	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036506	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036511	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036530	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036535	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4264831	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4472215	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4552462	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62318075	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62318079	0.84[EUR][1000 genomes]
rs62318080	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62318082	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62318085	0.84[EUR][1000 genomes]
rs62318087	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62318088	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62318089	0.88[EUR][1000 genomes]
rs62318090	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62318091	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62318092	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62318093	0.84[EUR][1000 genomes]
rs62318116	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62318118	0.84[EUR][1000 genomes]
rs62320069	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320070	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320112	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320113	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320115	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320116	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320117	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320120	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320124	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320128	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320129	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62321362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62321363	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62321366	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321372	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321373	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321374	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321375	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321376	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321377	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321378	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321380	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62321382	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67566720	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6853347	0.84[EUR][1000 genomes]
rs72660519	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72660521	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72660532	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72675686	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72675692	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72675702	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72677343	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72677353	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414280	chr4:106987397-107017178	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3419151	chr4:106987397-107020894	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106985000-107011400	Weak transcription	HepG2	liver
2	chr4:106994600-107015000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:106994800-107011600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:106995200-107011400	Weak transcription	Colonic Mucosa	Colon
5	chr4:106997200-107031000	Weak transcription	Psoas Muscle	Psoas
6	chr4:106999000-107011800	Weak transcription	Fetal Heart	heart
7	chr4:106999000-107012000	Weak transcription	NHDF-Ad	bronchial
8	chr4:107000000-107011400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr4:107001200-107018600	Weak transcription	HUVEC	blood vessel
10	chr4:107002800-107011400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr4:107004600-107011400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:107005200-107011400	Weak transcription	Thymus	Thymus
13	chr4:107008200-107011200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:107008800-107011200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:107008800-107013000	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr4:107008800-107013600	Weak transcription	NHLF	lung
17	chr4:107009000-107012200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:107009000-107012800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr4:107009400-107012600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:107009600-107011200	Strong transcription	Fetal Lung	lung
21	chr4:107009600-107012000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:107009600-107012600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:107009600-107012800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
24	chr4:107009600-107014800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
25	chr4:107009800-107012600	ZNF genes & repeats	Fetal Brain Female	brain
26	chr4:107009800-107012600	Strong transcription	Fetal Kidney	kidney
27	chr4:107009800-107012800	ZNF genes & repeats	Aorta	Aorta
28	chr4:107009800-107012800	ZNF genes & repeats	Liver	Liver
29	chr4:107009800-107013000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
30	chr4:107009800-107014200	ZNF genes & repeats	Lung	lung
31	chr4:107010000-107011200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr4:107010000-107011400	Strong transcription	Fetal Intestine Large	intestine
33	chr4:107010000-107011800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:107010000-107011800	Strong transcription	Right Ventricle	heart
35	chr4:107010000-107012600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:107010000-107012600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:107010000-107012800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr4:107010000-107012800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
39	chr4:107010000-107012800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
40	chr4:107010000-107012800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
41	chr4:107010000-107012800	ZNF genes & repeats	Fetal Muscle Leg	muscle
42	chr4:107010000-107012800	ZNF genes & repeats	Left Ventricle	heart
43	chr4:107010000-107012800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
44	chr4:107010000-107014200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:107010000-107014200	ZNF genes & repeats	Esophagus	oesophagus
46	chr4:107010000-107014400	ZNF genes & repeats	Fetal Intestine Small	intestine
47	chr4:107010000-107014600	ZNF genes & repeats	Fetal Stomach	stomach
48	chr4:107010200-107011200	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr4:107010200-107011200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr4:107010200-107011400	Strong transcription	Skeletal Muscle Female	skeletal muscle

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